RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 GLI3P10071 1580 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 C1orf167Q5SNV9 1468 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 MEGF6O75095 1541 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 CCP110O43303 1012 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 MYO1BO43795 1136 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 IFIT1P09914 478 aaKnown RBP11.64□□□□□ -0.55
COL17A1-203ENST00000393211 CCDC191Q8NCU4 936 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 TIGD1Q96MW7 591 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 NEUROD6Q96NK8 337 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 PRDM10Q9NQV6 1147 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 MAST3O60307 1309 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 DDX60Q8IY21 1712 aaKnown RBP11.63□□□□□ -0.55
COL17A1-203ENST00000393211 IKBKBO14920 756 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 FDPSP14324 419 aaKnown RBP11.63□□□□□ -0.55
COL17A1-203ENST00000393211 NLRP12P59046 1061 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 CCT2P78371 535 aaKnown RBP11.63□□□□□ -0.55
COL17A1-203ENST00000393211 STK38Q15208 465 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 IMMTQ16891 758 aaKnown RBP11.63□□□□□ -0.55
COL17A1-203ENST00000393211 LMOD2Q6P5Q4 547 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 AOPEPQ8N6M6 819 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 FBXO18Q8NFZ0 1043 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 AKAP2Q9Y2D5 859 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 TJP1Q07157 1748 aa11.63□□□□□ -0.55
COL17A1-203ENST00000393211 ADAMTSL3P82987 1691 aa11.62□□□□□ -0.55
COL17A1-203ENST00000393211 ATP5J2-PTCD1G3V325 749 aa11.62□□□□□ -0.55
COL17A1-203ENST00000393211 SPTLC2O15270 562 aa11.62□□□□□ -0.55
COL17A1-203ENST00000393211 PTCD1O75127 700 aaKnown RBP11.62□□□□□ -0.55
COL17A1-203ENST00000393211 SLU7O95391 586 aaKnown RBP11.62□□□□□ -0.55
COL17A1-203ENST00000393211 CMA1P23946 247 aa11.62□□□□□ -0.55
COL17A1-203ENST00000393211 CABP4P57796 275 aa11.62□□□□□ -0.55
COL17A1-203ENST00000393211 SF3A1Q15459 793 aaKnown RBP11.62□□□□□ -0.55
COL17A1-203ENST00000393211 C8orf76Q96K31 380 aa11.62□□□□□ -0.55
COL17A1-203ENST00000393211 NDUFB9Q9Y6M9 179 aa11.62□□□□□ -0.55
COL17A1-203ENST00000393211 CCDC158Q5M9N0 1113 aa11.61□□□□□ -0.55
COL17A1-203ENST00000393211 SYNE3Q6ZMZ3 975 aa11.61□□□□□ -0.55
COL17A1-203ENST00000393211 FILIP1Q7Z7B0 1213 aa11.61□□□□□ -0.55
COL17A1-203ENST00000393211 NBPF11Q86T75 865 aa11.61□□□□□ -0.55
COL17A1-203ENST00000393211 CREBRFQ8IUR6 639 aa11.61□□□□□ -0.55
COL17A1-203ENST00000393211 FTOQ9C0B1 505 aaKnown RBP eCLIP11.61□□□□□ -0.55
COL17A1-203ENST00000393211 L2HGDHQ9H9P8 463 aa11.61□□□□□ -0.55
COL17A1-203ENST00000393211 NCOA5Q9HCD5 579 aaKnown RBP11.61□□□□□ -0.55
COL17A1-203ENST00000393211 UBR2Q8IWV8 1755 aa11.61□□□□□ -0.55
COL17A1-203ENST00000393211 A0A1B0GUL7 405 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 SPDYE4A6NLX3 237 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 CYP27B1O15528 508 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 CHGBP05060 677 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 SLC3A2P08195 630 aaKnown RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 NDUFA8P51970 172 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 TIMM10P62072 90 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 MYSM1Q5VVJ2 828 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 TAF3Q5VWG9 929 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 MB21D2Q8IYB1 491 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 NCOA7Q8NI08 942 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 ZNF592Q92610 1267 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 FAM53CQ9NYF3 392 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 CEP126Q9P2H0 1117 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 NWD2Q9ULI1 1742 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 FAM237AA0A1B0GTK4 181 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 USP27XA6NNY8 438 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 M0R2C6 588 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 CBFA2T2O43439 604 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 SFPQP23246 707 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 ZC3H6P61129 1189 aaKnown RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 ARID5BQ14865 1188 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 ANO1Q5XXA6 986 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 ELOA2Q8IYF1 753 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 KRT222Q8N1A0 295 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 JMYQ8N9B5 988 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 RBM33Q96EV2 1170 aaKnown RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 C19orf44Q9H6X5 657 aa11.6□□□□□ -0.55
COL17A1-203ENST00000393211 ORC3Q9UBD5 711 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 ZNF215Q9UL58 517 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 NAP1L2Q9ULW6 460 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-203ENST00000393211 NEDD4P46934 1319 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 A0A1B0GVL5 298 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 PRC1O43663 620 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 PPP6R2O75170 966 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 CDKL5O76039 1030 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 ZNF202O95125 648 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 SLC39A14Q15043 492 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 FCHSD1Q86WN1 690 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 APPBP2Q92624 585 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 OSBP2Q969R2 916 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 TUBE1Q9UJT0 475 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 HPS5Q9UPZ3 1129 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 CLIC4Q9Y696 253 aa11.59□□□□□ -0.55
COL17A1-203ENST00000393211 CPDO75976 1380 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 C4AP0C0L4 1744 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 C4BP0C0L5 1744 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 KLF18A0A0U1RQI7 1052 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 NBPF26B4DH59 902 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 ERVV-2B6SEH9 535 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 CPLX1O14810 134 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 FOSBP53539 338 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 GUCY1B3Q02153 619 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 KIF23Q02241 960 aaPredicted RBP11.58□□□□□ -0.56
COL17A1-203ENST00000393211 DPCR1Q3MIW9 517 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 TTC39AQ5SRH9 613 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 AXDND1Q5T1B0 1012 aaPredicted RBP11.58□□□□□ -0.56
COL17A1-203ENST00000393211 NBPF14Q5TI25 921 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms