RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 EXOC6BQ9Y2D4 811 aa16.54■□□□□ 0.24
VPS28-202ENST00000377348 NOP58Q9Y2X3 529 aaKnown RBP16.54■□□□□ 0.24
VPS28-202ENST00000377348 FRAT2O75474 233 aaPredicted RBP16.53■□□□□ 0.24
VPS28-202ENST00000377348 USP17L8P0C7I0 530 aa16.53■□□□□ 0.24
VPS28-202ENST00000377348 FSTL1Q12841 308 aa16.53■□□□□ 0.24
VPS28-202ENST00000377348 CHAF1AQ13111 956 aaPredicted RBP16.53■□□□□ 0.24
VPS28-202ENST00000377348 MAP1SQ66K74 1059 aaPredicted RBP16.53■□□□□ 0.24
VPS28-202ENST00000377348 KIAA0825Q8IV33 1275 aa16.53■□□□□ 0.24
VPS28-202ENST00000377348 FAM205AQ6ZU69 1335 aa16.52■□□□□ 0.24
VPS28-202ENST00000377348 MYO3BQ8WXR4 1341 aa16.52■□□□□ 0.24
VPS28-202ENST00000377348 PHKA1P46020 1223 aa16.52■□□□□ 0.24
VPS28-202ENST00000377348 ZNF280AP59817 542 aaPredicted RBP16.52■□□□□ 0.24
VPS28-202ENST00000377348 KIF4BQ2VIQ3 1234 aa16.52■□□□□ 0.24
VPS28-202ENST00000377348 NEUROD6Q96NK8 337 aa16.52■□□□□ 0.24
VPS28-202ENST00000377348 AKAP2Q9Y2D5 859 aa16.52■□□□□ 0.24
VPS28-202ENST00000377348 SUPT16HQ9Y5B9 1047 aaKnown RBP16.52■□□□□ 0.24
VPS28-202ENST00000377348 F8W031 263 aaPredicted RBP16.51■□□□□ 0.23
VPS28-202ENST00000377348 XAGE2Q96GT9 111 aa16.51■□□□□ 0.23
VPS28-202ENST00000377348 MYOZ2Q9NPC6 264 aa16.51■□□□□ 0.23
VPS28-202ENST00000377348 ASTN2O75129 1339 aaPredicted RBP16.5■□□□□ 0.23
VPS28-202ENST00000377348 COL1A1P02452 1464 aaPredicted RBP16.5■□□□□ 0.23
VPS28-202ENST00000377348 HMMRO75330 724 aa16.5■□□□□ 0.23
VPS28-202ENST00000377348 TNNI3KQ59H18 835 aa16.5■□□□□ 0.23
VPS28-202ENST00000377348 MFSD14BQ5SR56 506 aa16.5■□□□□ 0.23
VPS28-202ENST00000377348 CCDC102BQ68D86 513 aa16.5■□□□□ 0.23
VPS28-202ENST00000377348 CNTROBQ8N137 903 aa16.5■□□□□ 0.23
VPS28-202ENST00000377348 FPGT-TNNI3KV9GXZ4 949 aa16.5■□□□□ 0.23
VPS28-202ENST00000377348 CEP350Q5VT06 3117 aa16.49■□□□□ 0.23
VPS28-202ENST00000377348 APBB1O00213 710 aa16.49■□□□□ 0.23
VPS28-202ENST00000377348 GRIK5Q16478 980 aa16.49■□□□□ 0.23
VPS28-202ENST00000377348 OGFOD1Q8N543 542 aa16.49■□□□□ 0.23
VPS28-202ENST00000377348 ARAP2Q8WZ64 1704 aa16.49■□□□□ 0.23
VPS28-202ENST00000377348 ITGBL1O95965 494 aaPredicted RBP16.48■□□□□ 0.23
VPS28-202ENST00000377348 HSPA6P17066 643 aa16.48■□□□□ 0.23
VPS28-202ENST00000377348 FKBP1AP62942 108 aaKnown RBP16.48■□□□□ 0.23
VPS28-202ENST00000377348 FMR1Q06787 632 aaKnown RBP eCLIP16.48■□□□□ 0.23
VPS28-202ENST00000377348 GNL3LQ9NVN8 582 aaKnown RBP16.48■□□□□ 0.23
VPS28-202ENST00000377348 PGAP2Q9UHJ9 254 aa16.48■□□□□ 0.23
VPS28-202ENST00000377348 PCDHB15Q9Y5E8 787 aa16.48■□□□□ 0.23
VPS28-202ENST00000377348 PCDHAC2Q9Y5I4 1007 aa16.48■□□□□ 0.23
VPS28-202ENST00000377348 HTRA3P83110 453 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 SCARF1Q14162 830 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 NBPF9Q3BBW0 867 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 GORABQ5T7V8 394 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 ZC3H15Q8WU90 426 aaKnown RBP16.47■□□□□ 0.23
VPS28-202ENST00000377348 DBNDD2Q9BQY9 259 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 GLIS2Q9BZE0 524 aaPredicted RBP16.47■□□□□ 0.23
VPS28-202ENST00000377348 CCDC8Q9H0W5 538 aaPredicted RBP16.47■□□□□ 0.23
VPS28-202ENST00000377348 BCL11AQ9H165 835 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 IL1RAPL2Q9NP60 686 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 GPR108Q9NPR9 543 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 TLR7Q9NYK1 1049 aaKnown RBP16.47■□□□□ 0.23
VPS28-202ENST00000377348 HDAC9Q9UKV0 1011 aa16.47■□□□□ 0.23
VPS28-202ENST00000377348 PASKQ96RG2 1323 aa16.46■□□□□ 0.23
VPS28-202ENST00000377348 TRAF5O00463 557 aa16.46■□□□□ 0.23
VPS28-202ENST00000377348 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
VPS28-202ENST00000377348 HSP90AB4PQ58FF6 505 aa16.46■□□□□ 0.23
VPS28-202ENST00000377348 DLK2Q6UY11 383 aa16.46■□□□□ 0.23
VPS28-202ENST00000377348 RHPN1Q8TCX5 695 aa16.46■□□□□ 0.23
VPS28-202ENST00000377348 EAF2Q96CJ1 260 aaPredicted RBP16.46■□□□□ 0.23
VPS28-202ENST00000377348 GGA3Q9NZ52 723 aa16.46■□□□□ 0.23
VPS28-202ENST00000377348 TTF2Q9UNY4 1162 aaKnown RBP16.46■□□□□ 0.23
VPS28-202ENST00000377348 WNT10BO00744 389 aa16.45■□□□□ 0.22
VPS28-202ENST00000377348 ANGEL2Q5VTE6 544 aaKnown RBP16.45■□□□□ 0.22
VPS28-202ENST00000377348 ERC1Q8IUD2 1116 aa16.45■□□□□ 0.22
VPS28-202ENST00000377348 EXOC6Q8TAG9 804 aa16.45■□□□□ 0.22
VPS28-202ENST00000377348 TBC1D22AQ8WUA7 517 aa16.45■□□□□ 0.22
VPS28-202ENST00000377348 DENND2AQ9ULE3 1009 aa16.45■□□□□ 0.22
VPS28-202ENST00000377348 SCAF8Q9UPN6 1271 aaKnown RBP16.45■□□□□ 0.22
VPS28-202ENST00000377348 SEMA3EO15041 775 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 APLP1P51693 650 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 IRX6P78412 446 aaPredicted RBP16.44■□□□□ 0.22
VPS28-202ENST00000377348 CFAP100Q494V2 611 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 PI16Q6UXB8 463 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 USP48Q86UV5 1035 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 AACSQ86V21 672 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 WDR66Q8TBY9 1149 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 KIF1BPQ96EK5 621 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 ZBED3Q96IU2 234 aaPredicted RBP16.44■□□□□ 0.22
VPS28-202ENST00000377348 DBNLQ9UJU6 430 aaKnown RBP16.44■□□□□ 0.22
VPS28-202ENST00000377348 AOX1Q06278 1338 aa16.44■□□□□ 0.22
VPS28-202ENST00000377348 MYH13Q9UKX3 1938 aa16.43■□□□□ 0.22
VPS28-202ENST00000377348 ADM5C9JUS6 153 aa16.43■□□□□ 0.22
VPS28-202ENST00000377348 MMP14P50281 582 aa16.43■□□□□ 0.22
VPS28-202ENST00000377348 RBM5P52756 815 aaKnown RBP eCLIP16.43■□□□□ 0.22
VPS28-202ENST00000377348 DLGAP5Q15398 846 aa16.43■□□□□ 0.22
VPS28-202ENST00000377348 DCPSQ96C86 337 aaKnown RBP16.43■□□□□ 0.22
VPS28-202ENST00000377348 HMG20BQ9P0W2 317 aa16.43■□□□□ 0.22
VPS28-202ENST00000377348 RAB11FIP3O75154 756 aa16.42■□□□□ 0.22
VPS28-202ENST00000377348 ARID4AP29374 1257 aaPredicted RBP16.42■□□□□ 0.22
VPS28-202ENST00000377348 PRDX5P30044 214 aa16.42■□□□□ 0.22
VPS28-202ENST00000377348 MCAMP43121 646 aa16.42■□□□□ 0.22
VPS28-202ENST00000377348 CRKP46108 304 aa16.42■□□□□ 0.22
VPS28-202ENST00000377348 TTC39AQ5SRH9 613 aa16.42■□□□□ 0.22
VPS28-202ENST00000377348 CDC37L1Q7L3B6 337 aa16.42■□□□□ 0.22
VPS28-202ENST00000377348 KRT26Q7Z3Y9 468 aa16.42■□□□□ 0.22
VPS28-202ENST00000377348 PRMT6Q96LA8 375 aaPredicted RBP16.42■□□□□ 0.22
VPS28-202ENST00000377348 SPDYE2BA6NHP3 402 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 SMARCA5O60264 1052 aaPredicted RBP16.41■□□□□ 0.22
VPS28-202ENST00000377348 SPDYE6P0CI01 402 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms