RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ARMCX5Q6P1M9 558 aa19.08■□□□□ 0.64
SDC4-201ENST00000372733 RAB11FIP4Q86YS3 637 aa19.08■□□□□ 0.64
SDC4-201ENST00000372733 KIAA1468Q9P260 1216 aa19.08■□□□□ 0.64
SDC4-201ENST00000372733 TTC5Q8N0Z6 440 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 GJB4Q9NTQ9 266 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 A0A1W2PQ27 194 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 A0A1W2PQ64 194 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 A0A1W2PQD8 194 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 HAND2P61296 217 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 FOXO4P98177 505 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 ZRSR1Q15695 479 aaKnown RBP19.07■□□□□ 0.64
SDC4-201ENST00000372733 PPP1R13BQ96KQ4 1090 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 KCND1Q9NSA2 647 aa19.07■□□□□ 0.64
SDC4-201ENST00000372733 KRT222Q8N1A0 295 aa19.06■□□□□ 0.64
SDC4-201ENST00000372733 LRRN4CLQ8ND94 238 aa19.06■□□□□ 0.64
SDC4-201ENST00000372733 MEGF6O75095 1541 aa19.06■□□□□ 0.64
SDC4-201ENST00000372733 SLFN14P0C7P3 912 aa19.06■□□□□ 0.64
SDC4-201ENST00000372733 IMPACTQ9P2X3 320 aa19.06■□□□□ 0.64
SDC4-201ENST00000372733 RNF113AO15541 343 aaKnown RBP19.05■□□□□ 0.64
SDC4-201ENST00000372733 IFIT1P09914 478 aaKnown RBP19.05■□□□□ 0.64
SDC4-201ENST00000372733 C8orf76Q96K31 380 aa19.05■□□□□ 0.64
SDC4-201ENST00000372733 LRRC24Q50LG9 513 aa19.05■□□□□ 0.64
SDC4-201ENST00000372733 SYT10Q6XYQ8 523 aa19.05■□□□□ 0.64
SDC4-201ENST00000372733 ZNF594Q96JF6 807 aaPredicted RBP19.05■□□□□ 0.64
SDC4-201ENST00000372733 SFPQP23246 707 aaKnown RBP eCLIP19.04■□□□□ 0.64
SDC4-201ENST00000372733 CCDC150Q8NCX0 1101 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 OSBP2Q969R2 916 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 GOLGA8BA8MQT2 603 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 KIF2AO00139 706 aaPredicted RBP19.04■□□□□ 0.64
SDC4-201ENST00000372733 SPTLC2O15270 562 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 SLC3A2P08195 630 aaKnown RBP19.04■□□□□ 0.64
SDC4-201ENST00000372733 TATP17735 454 aaPredicted RBP19.04■□□□□ 0.64
SDC4-201ENST00000372733 KCNG4Q8TDN1 519 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 MROH7-TTC4A0A0A0MT08 1334 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 KIF28PB7ZC32 967 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 MYSM1Q5VVJ2 828 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 ISM2Q6H9L7 571 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 PLBD2Q8NHP8 589 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 ST7Q9NRC1 585 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 ZNF446Q9NWS9 450 aa19.04■□□□□ 0.64
SDC4-201ENST00000372733 KLF18A0A0U1RQI7 1052 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 NCAPHQ15003 741 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 HSP90AB3PQ58FF7 597 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 BPIFA3Q9BQP9 254 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 POLR3EQ9NVU0 708 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 ORC3Q9UBD5 711 aaPredicted RBP19.03■□□□□ 0.64
SDC4-201ENST00000372733 FOXP2O15409 715 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 YEATS4O95619 227 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 LMOD1P29536 600 aaPredicted RBP19.03■□□□□ 0.64
SDC4-201ENST00000372733 ERCC6LQ2NKX8 1250 aa19.03■□□□□ 0.64
SDC4-201ENST00000372733 A0A1B0GUL7 405 aa19.02■□□□□ 0.64
SDC4-201ENST00000372733 ZNF202O95125 648 aa19.02■□□□□ 0.64
SDC4-201ENST00000372733 FBXO18Q8NFZ0 1043 aa19.02■□□□□ 0.64
SDC4-201ENST00000372733 L2HGDHQ9H9P8 463 aa19.02■□□□□ 0.64
SDC4-201ENST00000372733 PRC1O43663 620 aa19.02■□□□□ 0.63
SDC4-201ENST00000372733 PFKFB1P16118 471 aa19.02■□□□□ 0.63
SDC4-201ENST00000372733 IL15P40933 162 aaPredicted RBP19.02■□□□□ 0.63
SDC4-201ENST00000372733 NLRP12P59046 1061 aa19.02■□□□□ 0.63
SDC4-201ENST00000372733 IFNL2Q8IZJ0 200 aa19.02■□□□□ 0.63
SDC4-201ENST00000372733 HPS5Q9UPZ3 1129 aa19.02■□□□□ 0.63
SDC4-201ENST00000372733 H7C1W4 665 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 ATP1A3P13637 1013 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 EVCP57679 992 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 FKBP4Q02790 459 aaKnown RBP eCLIP19.01■□□□□ 0.63
SDC4-201ENST00000372733 TERF2Q15554 542 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 KRT28Q7Z3Y7 464 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 ANKLE2Q86XL3 938 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 FAM53CQ9NYF3 392 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 CYP27B1O15528 508 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 AXDND1Q5T1B0 1012 aaPredicted RBP19.01■□□□□ 0.63
SDC4-201ENST00000372733 TTLL7Q6ZT98 887 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 PUS3Q9BZE2 481 aaKnown RBP19.01■□□□□ 0.63
SDC4-201ENST00000372733 GPR108Q9NPR9 543 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 TAOK2Q9UL54 1235 aa19.01■□□□□ 0.63
SDC4-201ENST00000372733 TRPM3Q9HCF6 1732 aaPredicted RBP19.01■□□□□ 0.63
SDC4-201ENST00000372733 NWD2Q9ULI1 1742 aa19■□□□□ 0.63
SDC4-201ENST00000372733 PSDA5PKW4 1024 aaPredicted RBP19■□□□□ 0.63
SDC4-201ENST00000372733 KIF1AQ12756 1690 aa19■□□□□ 0.63
SDC4-201ENST00000372733 NBPF26B4DH59 902 aa19■□□□□ 0.63
SDC4-201ENST00000372733 EYA2O00167 538 aa19■□□□□ 0.63
SDC4-201ENST00000372733 MARCKSP29966 332 aaPredicted RBP19■□□□□ 0.63
SDC4-201ENST00000372733 TPM4P67936 248 aa19■□□□□ 0.63
SDC4-201ENST00000372733 FANCCQ00597 558 aa19■□□□□ 0.63
SDC4-201ENST00000372733 WASHC4Q2M389 1173 aa19■□□□□ 0.63
SDC4-201ENST00000372733 NBPF14Q5TI25 921 aa19■□□□□ 0.63
SDC4-201ENST00000372733 ANO1Q5XXA6 986 aa19■□□□□ 0.63
SDC4-201ENST00000372733 NBPF10Q6P3W6 841 aaKnown RBP19■□□□□ 0.63
SDC4-201ENST00000372733 NBPF15Q8N660 670 aa19■□□□□ 0.63
SDC4-201ENST00000372733 ANTXR2P58335 489 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 KIF23Q02241 960 aaPredicted RBP18.99■□□□□ 0.63
SDC4-201ENST00000372733 BRAPQ7Z569 592 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 CHMP4CQ96CF2 233 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 GLI3P10071 1580 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 CPLX1O14810 134 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 WDHD1O75717 1129 aaPredicted RBP18.99■□□□□ 0.63
SDC4-201ENST00000372733 CCDC93Q567U6 631 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 GORABQ5T7V8 394 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 SYNE3Q6ZMZ3 975 aa18.99■□□□□ 0.63
SDC4-201ENST00000372733 MB21D2Q8IYB1 491 aaPredicted RBP18.99■□□□□ 0.63
SDC4-201ENST00000372733 FBXL16Q8N461 479 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms