RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 VPS18Q9P253 973 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 KIF5AQ12840 1032 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 DNAJC21Q5F1R6 531 aaKnown RBP10.09□□□□□ -0.79
SYNE1-209ENST00000367257 ABCF2Q9UG63 623 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 FAM177BA6PVY3 158 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 GIGYF1O75420 1035 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-209ENST00000367257 IFNL2Q8IZJ0 200 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 CTNNBL1Q8WYA6 563 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-209ENST00000367257 SPAG5Q96R06 1193 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 CSRNP2Q9H175 543 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 C14orf93Q9H972 538 aaKnown RBP10.09□□□□□ -0.79
SYNE1-209ENST00000367257 JRKLQ9Y4A0 524 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 AGLP35573 1532 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 RANBP6O60518 1105 aaKnown RBP10.08□□□□□ -0.8
SYNE1-209ENST00000367257 BIRC2Q13490 618 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC96Q2M329 555 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 IFT74Q96LB3 600 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 GLT8D2Q9H1C3 349 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 MKRN1Q9UHC7 482 aaKnown RBP10.08□□□□□ -0.8
SYNE1-209ENST00000367257 MINDY4BA8MYZ0 360 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 ZBTB43O43298 467 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 IL15P40933 162 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-209ENST00000367257 WTAPQ15007 396 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 RAB3GAP1Q15042 981 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 ESYT1Q9BSJ8 1104 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE1-209ENST00000367257 TSPOAP1O95153 1857 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 NOP2P46087 812 aaKnown RBP10.08□□□□□ -0.8
SYNE1-209ENST00000367257 HDXQ7Z353 690 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 CKAP2LQ8IYA6 745 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 PPP1R14CQ8TAE6 165 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC97Q96F63 343 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-209ENST00000367257 ERO1AQ96HE7 468 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 SSX2IPQ9Y2D8 614 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 UHRF1BP1Q6BDS2 1440 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 ADGRL1O94910 1474 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 A0A1W2PRG0 241 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 RLBP1P12271 317 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 PLCG2P16885 1265 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC14Q49A88 953 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 CFAP58Q5T655 872 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 ANAPC4Q9UJX5 808 aa10.08□□□□□ -0.8
SYNE1-209ENST00000367257 INPP5BP32019 993 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 PPP2R5BQ15173 497 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC6Q16204 474 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 MCMDC2Q4G0Z9 681 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 RHPN1Q8TCX5 695 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 PIK3R5Q8WYR1 880 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 ADAMTSL3P82987 1691 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 LOC102724159A0A0B4J2E5 919 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 ZNF500O60304 480 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 SNRPA1P09661 255 aaKnown RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 ATP8B2P98198 1209 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 PWP2Q15269 919 aaKnown RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 APBB1IPQ7Z5R6 666 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 DDX54Q8TDD1 881 aaKnown RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC114Q96M63 670 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 VEZTQ9HBM0 779 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 IMPACTQ9P2X3 320 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 PZPP20742 1482 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 TET3O43151 1660 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 KIF3CO14782 793 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 STAT6P42226 847 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 RRS1Q15050 365 aaKnown RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 CEP120Q8N960 986 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 LLPHQ9BRT6 129 aaKnown RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 TSKSQ9UJT2 592 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 MTUS1Q9ULD2 1270 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 DUOX2Q9NRD8 1548 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 NPC1L1Q9UHC9 1359 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 PPIP5K1Q6PFW1 1433 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 RIOK3O14730 519 aaKnown RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 PRC1O43663 620 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 NOL3O60936 208 aaKnown RBP10.07□□□□□ -0.8
SYNE1-209ENST00000367257 SETDB1Q15047 1291 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 BCL2L12Q9HB09 334 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 STIM2Q9P246 746 aa10.07□□□□□ -0.8
SYNE1-209ENST00000367257 ATP7AQ04656 1500 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 RRAGBQ5VZM2 374 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 TTF2Q9UNY4 1162 aaKnown RBP10.06□□□□□ -0.8
SYNE1-209ENST00000367257 RTL1A6NKG5 1358 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 ATP10AO60312 1499 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 KIF24Q5T7B8 1368 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 UBE4AQ14139 1066 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 MCM6Q14566 821 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 RTN1Q16799 776 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 SYCP3Q8IZU3 236 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 GABPB2Q8TAK5 448 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-209ENST00000367257 UBA5Q9GZZ9 404 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 TRMT112Q9UI30 125 aaKnown RBP10.06□□□□□ -0.8
SYNE1-209ENST00000367257 SPHKAPQ2M3C7 1700 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 PARD3Q8TEW0 1356 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 TRIM75PA6NK02 468 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC152Q4G0S7 254 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 RPGRIP1Q96KN7 1286 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 C6orf50Q9HD87 102 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 PHF8Q9UPP1 1060 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 ERCC6LQ2NKX8 1250 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 PPFIBP2Q8ND30 876 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 TRIM7Q9C029 511 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms