RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 MICAL1Q8TDZ2 1067 aa9.8□□□□□ -0.84
SYNE1-206ENST00000367253 STX6O43752 255 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 GTPBP6O43824 516 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-206ENST00000367253 NOLC1Q14978 699 aaKnown RBP eCLIP9.79□□□□□ -0.84
SYNE1-206ENST00000367253 ANKRD1Q15327 319 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 MSANTD4Q8NCY6 345 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 TAF4BQ92750 862 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 TANGO6Q9C0B7 1094 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 DBF4Q9UBU7 674 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-206ENST00000367253 DEUP1Q05D60 604 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 CEP57L1Q8IYX8 460 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 LRRC43Q8N309 656 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 TRIM6Q9C030 488 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-206ENST00000367253 C6orf50Q9HD87 102 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 CNPY2Q9Y2B0 182 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 PFDN1O60925 122 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 MECOMQ03112 1051 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 SPECC1LQ69YQ0 1117 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 DPP9Q86TI2 863 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 SMARCC2Q8TAQ2 1214 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 RSRC1Q96IZ7 334 aaKnown RBP9.79□□□□□ -0.84
SYNE1-206ENST00000367253 CCDC172P0C7W6 258 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 MCM4P33991 863 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 KRT32Q14532 448 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 CCDC93Q567U6 631 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 SREK1Q8WXA9 508 aaKnown RBP9.79□□□□□ -0.84
SYNE1-206ENST00000367253 AZI2Q9H6S1 392 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 FAM50BQ9Y247 325 aa9.79□□□□□ -0.84
SYNE1-206ENST00000367253 ARHGEF37A1IGU5 675 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 CEP120Q8N960 986 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 KAT14Q9H8E8 782 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 FGFR1OPO95684 399 aaKnown RBP9.78□□□□□ -0.84
SYNE1-206ENST00000367253 NEK4P51957 841 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 STK3Q13188 491 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 MAST1Q9Y2H9 1570 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 WDR33Q9C0J8 1336 aaKnown RBP9.78□□□□□ -0.84
SYNE1-206ENST00000367253 BACH1O14867 736 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 ZSCAN12O43309 604 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 RANBP6O60518 1105 aaKnown RBP9.78□□□□□ -0.84
SYNE1-206ENST00000367253 RUFY4Q6ZNE9 571 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 TBC1D22AQ8WUA7 517 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 LEO1Q8WVC0 666 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-206ENST00000367253 TSG101Q99816 390 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 ZBTB3Q9H5J0 574 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 KCNG1Q9UIX4 513 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 NUCB1Q02818 461 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 NUDT18Q6ZVK8 323 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 CATIPQ7Z7H3 387 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 RTKN2Q8IZC4 609 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 NFATC2IPQ8NCF5 419 aa9.78□□□□□ -0.84
SYNE1-206ENST00000367253 ABCA9Q8IUA7 1624 aa9.77□□□□□ -0.84
SYNE1-206ENST00000367253 IVLP07476 585 aa9.77□□□□□ -0.84
SYNE1-206ENST00000367253 C6orf163Q5TEZ5 329 aa9.77□□□□□ -0.84
SYNE1-206ENST00000367253 AACSQ86V21 672 aa9.77□□□□□ -0.84
SYNE1-206ENST00000367253 KRT222Q8N1A0 295 aa9.77□□□□□ -0.84
SYNE1-206ENST00000367253 GCNAQ96QF7 691 aa9.77□□□□□ -0.84
SYNE1-206ENST00000367253 KRT85P78386 507 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 FBXO31Q5XUX0 539 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC113Q9H0I3 377 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC160A6NGH7 325 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 POTEB2H3BUK9 544 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 SLC4A2P04920 1241 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 HSPA4P34932 840 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 SNX16P57768 344 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 PDE1CQ14123 709 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-206ENST00000367253 TWISTNBQ3B726 338 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-206ENST00000367253 LRRC23Q53EV4 343 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC65Q8IXS2 484 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 KIF2CQ99661 725 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 WHAMMP3Q1A5X7 153 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 ALS2CR12Q96Q35 445 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 SIL1Q9H173 461 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 FAM114A2Q9NRY5 505 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 RNF181Q9P0P0 153 aa9.77□□□□□ -0.85
SYNE1-206ENST00000367253 RALGAPBQ86X10 1494 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC194A0A1B0GVG4 234 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 SRGAP3O43295 1099 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 UFL1O94874 794 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 TRIM37O94972 964 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 VPS36Q86VN1 386 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC155Q8N6L0 562 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 RAET1EQ8TD07 263 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 NAP1L4Q99733 375 aaKnown RBP9.76□□□□□ -0.85
SYNE1-206ENST00000367253 PHACTR2O75167 634 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 SFPQP23246 707 aaKnown RBP eCLIP9.76□□□□□ -0.85
SYNE1-206ENST00000367253 GCOM1H8Y6P7 765 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-206ENST00000367253 PLXNC1O60486 1568 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 URI1O94763 535 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-206ENST00000367253 MYZAPP0CAP1 466 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC40Q4G0X9 1142 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 MCF2L2Q86YR7 1114 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 CD2APQ9Y5K6 639 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 ZBBXA8MT70 800 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 IFFO1Q0D2I5 559 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC14Q49A88 953 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 ERFEQ4G0M1 354 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 CDAN1Q8IWY9 1227 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 SEPT12Q8IYM1 358 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 FBF1Q8TES7 1133 aa9.76□□□□□ -0.85
SYNE1-206ENST00000367253 DPF3Q92784 378 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms