RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ZC3H12CQ9C0D7 883 aaKnown RBP24.05■■□□□ 1.44
CLN3-205ENST00000359984 WWC3Q9ULE0 1092 aa24.05■■□□□ 1.44
CLN3-205ENST00000359984 NLGN2Q8NFZ4 835 aa24.04■■□□□ 1.44
CLN3-205ENST00000359984 RUFY2Q8WXA3 655 aa24.04■■□□□ 1.44
CLN3-205ENST00000359984 EYA3Q99504 573 aa24.04■■□□□ 1.44
CLN3-205ENST00000359984 PDS5AQ29RF7 1337 aaKnown RBP24.04■■□□□ 1.44
CLN3-205ENST00000359984 SGSM2O43147 1006 aa24.04■■□□□ 1.44
CLN3-205ENST00000359984 IL1R1P14778 569 aa24.04■■□□□ 1.44
CLN3-205ENST00000359984 GRIPAP1Q4V328 841 aa24.04■■□□□ 1.44
CLN3-205ENST00000359984 A0A0D9SFI3 127 aa24.03■■□□□ 1.44
CLN3-205ENST00000359984 RNF113AO15541 343 aaKnown RBP24.03■■□□□ 1.44
CLN3-205ENST00000359984 EIF5BO60841 1220 aaKnown RBP24.03■■□□□ 1.44
CLN3-205ENST00000359984 SLFNL1Q499Z3 407 aa24.03■■□□□ 1.44
CLN3-205ENST00000359984 IDH1O75874 414 aaKnown RBP24.02■■□□□ 1.44
CLN3-205ENST00000359984 CHAF1AQ13111 956 aaPredicted RBP24.02■■□□□ 1.44
CLN3-205ENST00000359984 RTKN2Q8IZC4 609 aa24.02■■□□□ 1.44
CLN3-205ENST00000359984 COA1Q9GZY4 146 aa24.02■■□□□ 1.44
CLN3-205ENST00000359984 LRRFIP1Q32MZ4 808 aaKnown RBP24.02■■□□□ 1.44
CLN3-205ENST00000359984 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.02■■□□□ 1.442e-6■■■■■ 40.7
CLN3-205ENST00000359984 UPF2Q9HAU5 1272 aaKnown RBP24.02■■□□□ 1.44
CLN3-205ENST00000359984 BRCA1P38398 1863 aaKnown RBP24.01■■□□□ 1.43
CLN3-205ENST00000359984 ZFYP08048 801 aaPredicted RBP24.01■■□□□ 1.43
CLN3-205ENST00000359984 REC8O95072 547 aa24■■□□□ 1.43
CLN3-205ENST00000359984 ZMYM1Q5SVZ6 1142 aa24■■□□□ 1.43
CLN3-205ENST00000359984 SOGA3Q5TF21 947 aa24■■□□□ 1.43
CLN3-205ENST00000359984 SUPT20HQ8NEM7 779 aa24■■□□□ 1.43
CLN3-205ENST00000359984 JAG2Q9Y219 1238 aa24■■□□□ 1.43
CLN3-205ENST00000359984 DOK7Q18PE1 504 aa24■■□□□ 1.43
CLN3-205ENST00000359984 SLC9C2Q5TAH2 1124 aa24■■□□□ 1.43
CLN3-205ENST00000359984 ZSCAN25Q6NSZ9 544 aa24■■□□□ 1.43
CLN3-205ENST00000359984 FHDC1Q9C0D6 1143 aaPredicted RBP24■■□□□ 1.43
CLN3-205ENST00000359984 ABCF2Q9UG63 623 aa24■■□□□ 1.43
CLN3-205ENST00000359984 ADD2P35612 726 aa23.99■■□□□ 1.43
CLN3-205ENST00000359984 MAP3K12Q12852 859 aa23.99■■□□□ 1.43
CLN3-205ENST00000359984 SEC62Q99442 399 aaKnown RBP23.99■■□□□ 1.43
CLN3-205ENST00000359984 PSMD1Q99460 953 aa23.99■■□□□ 1.43
CLN3-205ENST00000359984 LRP2BPQ9P2M1 347 aa23.99■■□□□ 1.43
CLN3-205ENST00000359984 RAD50Q92878 1312 aa23.99■■□□□ 1.43
CLN3-205ENST00000359984 USP26Q9BXU7 913 aa23.98■■□□□ 1.43
CLN3-205ENST00000359984 BCS1LQ9Y276 419 aa23.98■■□□□ 1.43
CLN3-205ENST00000359984 MYO5AQ9Y4I1 1855 aaKnown RBP23.98■■□□□ 1.43
CLN3-205ENST00000359984 PDE6AP16499 860 aa23.98■■□□□ 1.43
CLN3-205ENST00000359984 MCMDC2Q4G0Z9 681 aa23.98■■□□□ 1.43
CLN3-205ENST00000359984 WDR66Q8TBY9 1149 aa23.98■■□□□ 1.43
CLN3-205ENST00000359984 ANO2Q9NQ90 1003 aa23.98■■□□□ 1.43
CLN3-205ENST00000359984 HELLSQ9NRZ9 838 aa23.98■■□□□ 1.43
CLN3-205ENST00000359984 KIAA2012Q0VF49 1180 aa23.97■■□□□ 1.43
CLN3-205ENST00000359984 AOC3Q16853 763 aa23.97■■□□□ 1.43
CLN3-205ENST00000359984 ZNF589Q86UQ0 364 aaPredicted RBP23.97■■□□□ 1.43
CLN3-205ENST00000359984 OSBP2Q969R2 916 aa23.97■■□□□ 1.43
CLN3-205ENST00000359984 MYH13Q9UKX3 1938 aa23.97■■□□□ 1.43
CLN3-205ENST00000359984 DOCK2Q92608 1830 aa23.97■■□□□ 1.43
CLN3-205ENST00000359984 G3V3G9 751 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 UBE3CQ15386 1083 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 DCAF8Q5TAQ9 597 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 APPBP2Q92624 585 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 TBC1D32Q96NH3 1257 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 C22orf23Q9BZE7 217 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 ZNF532Q9HCE3 1301 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 TCRBV5S4A2TA0A5A2 114 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 MAGEB6Q8N7X4 407 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 DBNDD1Q9H9R9 158 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 RAI14Q9P0K7 980 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 SALL1Q9NSC2 1324 aa23.96■■□□□ 1.43
CLN3-205ENST00000359984 CCDC129Q6ZRS4 1044 aa23.95■■□□□ 1.42
CLN3-205ENST00000359984 LSG1Q9H089 658 aaKnown RBP23.95■■□□□ 1.42
CLN3-205ENST00000359984 FAM205AQ6ZU69 1335 aa23.95■■□□□ 1.42
CLN3-205ENST00000359984 PPIP5K2O43314 1243 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 KIAA1211Q6ZU35 1233 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 ERICH6Q7L0X2 663 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 MYH7P12883 1935 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 MAST3O60307 1309 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 M0R2C6 588 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 GTF2IP78347 998 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 PODNQ7Z5L7 613 aa23.94■■□□□ 1.42
CLN3-205ENST00000359984 ZGPATQ8N5A5 531 aaKnown RBP23.94■■□□□ 1.42
CLN3-205ENST00000359984 PUS7LQ9H0K6 701 aaKnown RBP23.94■■□□□ 1.42
CLN3-205ENST00000359984 ZNF277Q9NRM2 450 aaPredicted RBP23.94■■□□□ 1.42
CLN3-205ENST00000359984 GOLGB1Q14789 3259 aaKnown RBP23.93■■□□□ 1.42
CLN3-205ENST00000359984 SOCS7O14512 581 aa23.93■■□□□ 1.42
CLN3-205ENST00000359984 PRDX5P30044 214 aa23.93■■□□□ 1.42
CLN3-205ENST00000359984 PTH1RQ03431 593 aa23.93■■□□□ 1.42
CLN3-205ENST00000359984 CHD4Q14839 1912 aa23.92■■□□□ 1.42
CLN3-205ENST00000359984 ECE2O60344 883 aa23.92■■□□□ 1.42
CLN3-205ENST00000359984 SPTY2D1Q68D10 685 aaPredicted RBP23.92■■□□□ 1.42
CLN3-205ENST00000359984 ZNF384Q8TF68 577 aa23.92■■□□□ 1.42
CLN3-205ENST00000359984 SYT17Q9BSW7 474 aa23.92■■□□□ 1.42
CLN3-205ENST00000359984 CCDC171Q6TFL3 1326 aa23.92■■□□□ 1.42
CLN3-205ENST00000359984 RBM25P49756 843 aaKnown RBP23.92■■□□□ 1.42
CLN3-205ENST00000359984 GRIK5Q16478 980 aa23.92■■□□□ 1.42
CLN3-205ENST00000359984 VPS33BQ9H267 617 aa23.92■■□□□ 1.42
CLN3-205ENST00000359984 EPB41L2O43491 1005 aaKnown RBP23.91■■□□□ 1.42
CLN3-205ENST00000359984 MECOMQ03112 1051 aa23.91■■□□□ 1.42
CLN3-205ENST00000359984 TTLL5Q6EMB2 1281 aa23.91■■□□□ 1.42
CLN3-205ENST00000359984 TBC1D22AQ8WUA7 517 aa23.91■■□□□ 1.42
CLN3-205ENST00000359984 NSUN4Q96CB9 384 aaKnown RBP23.91■■□□□ 1.42
CLN3-205ENST00000359984 KCNQ5Q9NR82 932 aa23.91■■□□□ 1.42
CLN3-205ENST00000359984 NFKBIEO00221 500 aa23.9■■□□□ 1.42
CLN3-205ENST00000359984 LDHBP07195 334 aaKnown RBP23.9■■□□□ 1.42
CLN3-205ENST00000359984 CYP7A1P22680 504 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms