RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 RGPD3A6NKT7 1758 aaPredicted RBP10.97□□□□□ -0.65
UPF2-202ENST00000357604 RGPD4Q7Z3J3 1758 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 RNF113AO15541 343 aaKnown RBP10.96□□□□□ -0.65
UPF2-202ENST00000357604 USP17L8P0C7I0 530 aa10.96□□□□□ -0.65
UPF2-202ENST00000357604 FOXO4P98177 505 aa10.96□□□□□ -0.65
UPF2-202ENST00000357604 TBC1D16Q8TBP0 767 aa10.96□□□□□ -0.65
UPF2-202ENST00000357604 IKQ13123 557 aaPredicted RBP10.96□□□□□ -0.65
UPF2-202ENST00000357604 GNL2Q13823 731 aaKnown RBP10.96□□□□□ -0.65
UPF2-202ENST00000357604 ARHGEF6Q15052 776 aa10.96□□□□□ -0.65
UPF2-202ENST00000357604 C2orf69Q8N8R5 385 aa10.96□□□□□ -0.65
UPF2-202ENST00000357604 AGBL3Q8NEM8 1001 aa10.96□□□□□ -0.66
UPF2-202ENST00000357604 ZNF526Q8TF50 670 aaPredicted RBP10.96□□□□□ -0.66
UPF2-202ENST00000357604 RIC1Q4ADV7 1423 aa10.96□□□□□ -0.66
UPF2-202ENST00000357604 DHX16O60231 1041 aaKnown RBP10.96□□□□□ -0.66
UPF2-202ENST00000357604 KRT32Q14532 448 aa10.96□□□□□ -0.66
UPF2-202ENST00000357604 TEX11Q8IYF3 940 aa10.96□□□□□ -0.66
UPF2-202ENST00000357604 CELF1Q92879 486 aaKnown RBP10.96□□□□□ -0.66
UPF2-202ENST00000357604 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.95□□□□□ -0.66
UPF2-202ENST00000357604 CSADQ9Y600 493 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 STRIP1Q5VSL9 837 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 USP48Q86UV5 1035 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 MTX1Q13505 466 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 RABL6Q3YEC7 729 aaPredicted RBP10.95□□□□□ -0.66
UPF2-202ENST00000357604 TICAM2Q86XR7 235 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 ITGB4P16144 1822 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 BRWD3Q6RI45 1802 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 PPP1R12BO60237 982 aaPredicted RBP10.95□□□□□ -0.66
UPF2-202ENST00000357604 PICALMQ13492 652 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 MAGEB6Q8N7X4 407 aa10.95□□□□□ -0.66
UPF2-202ENST00000357604 IQSEC3Q9UPP2 1182 aaPredicted RBP10.95□□□□□ -0.66
UPF2-202ENST00000357604 U3KPZ7 1027 aaPredicted RBP10.95□□□□□ -0.66
UPF2-202ENST00000357604 SMARCA5O60264 1052 aaPredicted RBP10.94□□□□□ -0.66
UPF2-202ENST00000357604 IREB2P48200 963 aaKnown RBP10.94□□□□□ -0.66
UPF2-202ENST00000357604 MPHOSPH6Q99547 160 aaKnown RBP10.94□□□□□ -0.66
UPF2-202ENST00000357604 HELLSQ9NRZ9 838 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 C10orf71Q711Q0 1435 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 RAD17O75943 681 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 NUCB1Q02818 461 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 ZNF408Q9H9D4 720 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 BCL2L12Q9HB09 334 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 TMOD4Q9NZQ9 345 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 SLC4A4Q9Y6R1 1079 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 ST18O60284 1047 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 PAPPAQ13219 1627 aa10.94□□□□□ -0.66
UPF2-202ENST00000357604 PABPC4Q13310 644 aaKnown RBP eCLIP10.93□□□□□ -0.66
UPF2-202ENST00000357604 LRRC24Q50LG9 513 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 SLC9C2Q5TAH2 1124 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 CCDC102BQ68D86 513 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 GPC2Q8N158 579 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 FEZ1Q99689 392 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 NOP58Q9Y2X3 529 aaKnown RBP10.93□□□□□ -0.66
UPF2-202ENST00000357604 GYG1P46976 350 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 ATP2B2Q01814 1243 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 TRAF1Q13077 416 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 RSBN1LQ6PCB5 846 aaPredicted RBP10.93□□□□□ -0.66
UPF2-202ENST00000357604 HSCBQ8IWL3 235 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 SMC1BQ8NDV3 1235 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 RAD50Q92878 1312 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 UBAC1Q9BSL1 405 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 PODXL2Q9NZ53 605 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 FKBP1AP62942 108 aaKnown RBP10.93□□□□□ -0.66
UPF2-202ENST00000357604 POLA2Q14181 598 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 SNRKQ9NRH2 765 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 ADARB2Q9NS39 739 aaKnown RBP10.93□□□□□ -0.66
UPF2-202ENST00000357604 USP40Q9NVE5 1235 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 C20orf194Q5TEA3 1177 aa10.93□□□□□ -0.66
UPF2-202ENST00000357604 KIAA2012Q0VF49 1180 aa10.92□□□□□ -0.66
UPF2-202ENST00000357604 KIF4BQ2VIQ3 1234 aa10.92□□□□□ -0.66
UPF2-202ENST00000357604 CCDC69A6NI79 296 aa10.92□□□□□ -0.66
UPF2-202ENST00000357604 IL27Q8NEV9 243 aa10.92□□□□□ -0.66
UPF2-202ENST00000357604 CNNM2Q9H8M5 875 aa10.92□□□□□ -0.66
UPF2-202ENST00000357604 CD209Q9NNX6 404 aa10.92□□□□□ -0.66
UPF2-202ENST00000357604 DLG5Q8TDM6 1919 aa10.92□□□□□ -0.66
UPF2-202ENST00000357604 RLBP1P12271 317 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 ATP5JP18859 108 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 BCAMP50895 628 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 PTPN12Q05209 780 aaKnown RBP10.91□□□□□ -0.66
UPF2-202ENST00000357604 ABT1Q9ULW3 272 aaKnown RBP10.91□□□□□ -0.66
UPF2-202ENST00000357604 PPP2R3BQ9Y5P8 575 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 RRP12Q5JTH9 1297 aaKnown RBP10.91□□□□□ -0.66
UPF2-202ENST00000357604 USP50Q70EL3 339 aaPredicted RBP10.91□□□□□ -0.66
UPF2-202ENST00000357604 KRT23Q9C075 422 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 VEGFAP15692 232 aaPredicted RBP10.91□□□□□ -0.66
UPF2-202ENST00000357604 XBP1P17861 261 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 KIF22Q14807 665 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 KIAA0825Q8IV33 1275 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 HMGB1P09429 215 aaKnown RBP10.91□□□□□ -0.66
UPF2-202ENST00000357604 RASSF7Q02833 373 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 KLHDC4Q8TBB5 520 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 TCEAL9Q9UHQ7 104 aa10.91□□□□□ -0.66
UPF2-202ENST00000357604 MCMDC2Q4G0Z9 681 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 ARHGEF10LQ9HCE6 1279 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 LTBP3Q9NS15 1303 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 TOGARAM1Q9Y4F4 1720 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 PNMA6EA0A0J9YXQ4 647 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 ZNF213O14771 459 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 CFAP100Q494V2 611 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 CRY2Q49AN0 593 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 IQCA1Q86XH1 822 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 PUS3Q9BZE2 481 aaKnown RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms