RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NDUFAB1O14561 156 aa22.14■■□□□ 1.14
CCDC88B-202ENST00000356786 TMTC2Q8N394 836 aa22.14■■□□□ 1.14
CCDC88B-202ENST00000356786 POLKQ9UBT6 870 aa22.14■■□□□ 1.14
CCDC88B-202ENST00000356786 BRD1O95696 1058 aa22.14■■□□□ 1.14
CCDC88B-202ENST00000356786 TLDC2A0PJX2 215 aa22.14■■□□□ 1.13
CCDC88B-202ENST00000356786 PAIP2Q9BPZ3 127 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-202ENST00000356786 ABCA8O94911 1581 aa22.14■■□□□ 1.13
CCDC88B-202ENST00000356786 ASIC1P78348 528 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 ARID5AQ03989 594 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 KAT14Q9H8E8 782 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 FANCCQ00597 558 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 SELENOSQ9BQE4 189 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 KRT23Q9C075 422 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 GCC2Q8IWJ2 1684 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 OAS2P29728 719 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 LEO1Q8WVC0 666 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 CEP63Q96MT8 703 aa22.13■■□□□ 1.13
CCDC88B-202ENST00000356786 LMBR1LQ6UX01 489 aa22.12■■□□□ 1.13
CCDC88B-202ENST00000356786 LRRC27Q9C0I9 530 aa22.12■■□□□ 1.13
CCDC88B-202ENST00000356786 SNX14Q9Y5W7 946 aa22.12■■□□□ 1.13
CCDC88B-202ENST00000356786 NAA25Q14CX7 972 aa22.12■■□□□ 1.13
CCDC88B-202ENST00000356786 KSR2Q6VAB6 950 aa22.12■■□□□ 1.13
CCDC88B-202ENST00000356786 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.12■■□□□ 1.13
CCDC88B-202ENST00000356786 IGSF22Q8N9C0 903 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 HOMER2Q9NSB8 354 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 TMOD3Q9NYL9 352 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 MBD5Q9P267 1494 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 ELP1O95163 1332 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 INPP5BP32019 993 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 PPM1EQ8WY54 764 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 NAPGQ99747 312 aaPredicted RBP22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 RAD50Q92878 1312 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 PDE4BQ07343 736 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 B4GALNT4Q76KP1 1039 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 PAG1Q9NWQ8 432 aa22.11■■□□□ 1.13
CCDC88B-202ENST00000356786 STAMBPO95630 424 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 COPS6Q7L5N1 327 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 KRI1Q8N9T8 703 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 XAGE3Q8WTP9 111 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 PLVAPQ9BX97 442 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 RABEP2Q9H5N1 569 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 CNNM2Q9H8M5 875 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 IMPACTQ9P2X3 320 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 TNIP1Q15025 636 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 ESR2Q92731 530 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 ZSCAN26Q16670 478 aa22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 ZNF215Q9UL58 517 aaPredicted RBP22.1■■□□□ 1.13
CCDC88B-202ENST00000356786 SBNO2Q9Y2G9 1366 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 SMIM23A6NLE4 172 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 CCT6AP40227 531 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 SLC9C2Q5TAH2 1124 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 COL17A1Q9UMD9 1497 aaPredicted RBP22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 A0A1B0GUA9 196 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 RSRC1Q96IZ7 334 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 STX8Q9UNK0 236 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 LINS1Q8NG48 757 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 ARHGAP6O43182 974 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 RPS6KB1P23443 525 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 LRMPQ12912 555 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 CRACR2BQ8N4Y2 399 aaPredicted RBP22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 PUS7Q96PZ0 661 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 CCDC77Q9BR77 488 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 RASAL2Q9UJF2 1139 aa22.09■■□□□ 1.13
CCDC88B-202ENST00000356786 KRT13P13646 458 aa22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 PKP1Q13835 747 aa22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 ERCC6LQ2NKX8 1250 aa22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 STMN4Q9H169 189 aaPredicted RBP22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 GOLGA6CA6NDK9 693 aa22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 CCDC172P0C7W6 258 aa22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 GOLGA6DP0CG33 693 aa22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 GOLGA6AQ9NYA3 693 aa22.08■■□□□ 1.13
CCDC88B-202ENST00000356786 SGSM2O43147 1006 aa22.08■■□□□ 1.12
CCDC88B-202ENST00000356786 UQCRFS1P1P0C7P4 283 aa22.08■■□□□ 1.12
CCDC88B-202ENST00000356786 IFIT1BQ5T764 474 aaKnown RBP22.08■■□□□ 1.12
CCDC88B-202ENST00000356786 SERPINA10Q9UK55 444 aa22.08■■□□□ 1.12
CCDC88B-202ENST00000356786 RXRAP19793 462 aa22.08■■□□□ 1.12
CCDC88B-202ENST00000356786 IKBKGQ9Y6K9 419 aa22.08■■□□□ 1.12
CCDC88B-202ENST00000356786 ATP2B3Q16720 1220 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 ARHGEF5Q12774 1597 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 SNRPA1P09661 255 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 IL15P40933 162 aaPredicted RBP22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 EIF4A2Q14240 407 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 NEBLO76041 1014 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 TUBB2AQ13885 445 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 TTC14Q96N46 770 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 TUBB2BQ9BVA1 445 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 SAMD15Q9P1V8 674 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 MSH6P52701 1360 aa22.07■■□□□ 1.12
CCDC88B-202ENST00000356786 HPDP32754 393 aaPredicted RBP22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 SYCP3Q8IZU3 236 aa22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 IQUBQ8NA54 791 aa22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 TTF2Q9UNY4 1162 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 PPIP5K1Q6PFW1 1433 aa22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 TNNC1P63316 161 aa22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 GRIPAP1Q4V328 841 aa22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 TRMT1LQ7Z2T5 733 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 CWF19L2Q2TBE0 894 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 SLC4A8Q2Y0W8 1093 aa22.06■■□□□ 1.12
CCDC88B-202ENST00000356786 LMBR1Q8WVP7 490 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 ZBTB16Q05516 673 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms