RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 NMRK2Q9NPI5 230 aa9.46□□□□□ -0.9
VPS13A-201ENST00000355766 KIF7Q2M1P5 1343 aa9.46□□□□□ -0.9
VPS13A-201ENST00000355766 KIAA1551Q9HCM1 1747 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 HTRA3P83110 453 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 IRF5Q13568 498 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 TSGA10IPQ3SY00 556 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 WDR44Q5JSH3 913 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 FOXR1Q6PIV2 292 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 AMIGO3Q86WK7 504 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 TMEM151AQ8N4L1 468 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 CNKSR1Q969H4 720 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 ESYT1Q9BSJ8 1104 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 C10orf71Q711Q0 1435 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 TAF1LQ8IZX4 1826 aa9.45□□□□□ -0.9
VPS13A-201ENST00000355766 H7C1W4 665 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 CCER2I3L3R5 266 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 RNF225M0QZC1 329 aaPredicted RBP9.44□□□□□ -0.9
VPS13A-201ENST00000355766 GDF11O95390 407 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 MYCP01106 439 aaPredicted RBP9.44□□□□□ -0.9
VPS13A-201ENST00000355766 CELA2BP08218 269 aaPredicted RBP9.44□□□□□ -0.9
VPS13A-201ENST00000355766 CENPCQ03188 943 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 FSTL1Q12841 308 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 TAS1R3Q7RTX0 852 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 LTV1Q96GA3 475 aaPredicted RBP9.44□□□□□ -0.9
VPS13A-201ENST00000355766 TIMMDC1Q9NPL8 285 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 MBIPQ9NS73 344 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 PLEKHG2Q9H7P9 1386 aa9.44□□□□□ -0.9
VPS13A-201ENST00000355766 RTL1A6NKG5 1358 aa9.43□□□□□ -0.9
VPS13A-201ENST00000355766 ST20-MTHFSA0A0A6YYL1 179 aa9.43□□□□□ -0.9
VPS13A-201ENST00000355766 MARSP56192 900 aaKnown RBP9.43□□□□□ -0.9
VPS13A-201ENST00000355766 PHTF2Q8N3S3 785 aa9.43□□□□□ -0.9
VPS13A-201ENST00000355766 PUS7Q96PZ0 661 aaKnown RBP9.43□□□□□ -0.9
VPS13A-201ENST00000355766 TESK2Q96S53 571 aa9.43□□□□□ -0.9
VPS13A-201ENST00000355766 HRH3Q9Y5N1 445 aa9.43□□□□□ -0.9
VPS13A-201ENST00000355766 UBR3Q6ZT12 1888 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 A0A1W2PP64 1363 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 CGNL1Q0VF96 1302 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 MAP3K19Q56UN5 1328 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 ANP32CO43423 234 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 SSFA2P28290 1259 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 HOXC9P31274 260 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 TMF1P82094 1093 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 DDX10Q13206 875 aaKnown RBP9.42□□□□□ -0.9
VPS13A-201ENST00000355766 HDGFL2Q7Z4V5 671 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-201ENST00000355766 C16orf71Q8IYS4 520 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-201ENST00000355766 XAGE2Q96GT9 111 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 KIF13BQ9NQT8 1826 aa9.42□□□□□ -0.9
VPS13A-201ENST00000355766 PCDH11XQ9BZA7 1347 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 PCDH11YQ9BZA8 1340 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 F11P03951 625 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 IRS1P35568 1242 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 MAP3K10Q02779 954 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 PRM3Q9NNZ6 103 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 BCS1LQ9Y276 419 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 PKD1L3Q7Z443 1732 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 KCPQ6ZWJ8 1503 aa9.41□□□□□ -0.9
VPS13A-201ENST00000355766 TNRC6CQ9HCJ0 1690 aaKnown RBP9.4□□□□□ -0.9
VPS13A-201ENST00000355766 HSPA1AP0DMV8 641 aaKnown RBP9.4□□□□□ -0.9
VPS13A-201ENST00000355766 HSPA1BP0DMV9 641 aaKnown RBP9.4□□□□□ -0.9
VPS13A-201ENST00000355766 SMIM5Q71RC9 77 aa9.4□□□□□ -0.9
VPS13A-201ENST00000355766 SMARCC1Q92922 1105 aaPredicted RBP9.4□□□□□ -0.9
VPS13A-201ENST00000355766 TRERF1Q96PN7 1200 aa9.4□□□□□ -0.9
VPS13A-201ENST00000355766 ZSCAN10Q96SZ4 725 aaPredicted RBP9.4□□□□□ -0.9
VPS13A-201ENST00000355766 NUCKS1Q9H1E3 243 aaKnown RBP9.4□□□□□ -0.9
VPS13A-201ENST00000355766 DOLKQ9UPQ8 538 aa9.4□□□□□ -0.9
VPS13A-201ENST00000355766 KAT6BQ8WYB5 2073 aa9.4□□□□□ -0.91
VPS13A-201ENST00000355766 SMG6Q86US8 1419 aaKnown RBP9.39□□□□□ -0.91
VPS13A-201ENST00000355766 THBS1P07996 1170 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 MMP10P09238 476 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 PHKA2P46019 1235 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 TGFB2P61812 414 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 VAC14Q08AM6 782 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 SLFNL1Q499Z3 407 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 RAPGEF4Q8WZA2 1011 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 GDPD2Q9HCC8 539 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 RGPD2P0DJD1 1756 aa9.39□□□□□ -0.91
VPS13A-201ENST00000355766 KDM2BQ8NHM5 1336 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 STAU1O95793 577 aaKnown RBP9.38□□□□□ -0.91
VPS13A-201ENST00000355766 TATP17735 454 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-201ENST00000355766 AMPHP49418 695 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 NBPF6Q5VWK0 638 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 C9orf131Q5VYM1 1079 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 MPRIPQ6WCQ1 1025 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 ARHGAP27Q6ZUM4 889 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 RNF135Q8IUD6 432 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 USHBP1Q8N6Y0 703 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 LINC00116Q8NCU8 138 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 TMC1Q8TDI8 760 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 SCARF2Q96GP6 870 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-201ENST00000355766 NBPF4Q96M43 638 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 TERF2IPQ9NYB0 399 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 PCNTO95613 3336 aa9.38□□□□□ -0.91
VPS13A-201ENST00000355766 MAP2P11137 1827 aaKnown RBP9.38□□□□□ -0.91
VPS13A-201ENST00000355766 NPC1L1Q9UHC9 1359 aa9.37□□□□□ -0.91
VPS13A-201ENST00000355766 N4BP2Q86UW6 1770 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-201ENST00000355766 A0A0G2JLW4 131 aa9.37□□□□□ -0.91
VPS13A-201ENST00000355766 USP4Q13107 963 aa9.37□□□□□ -0.91
VPS13A-201ENST00000355766 SMC1BQ8NDV3 1235 aa9.37□□□□□ -0.91
VPS13A-201ENST00000355766 ACDQ96AP0 544 aa9.37□□□□□ -0.91
VPS13A-201ENST00000355766 SLC12A5Q9H2X9 1139 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms