RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 NBPF11Q86T75 865 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 BICD2Q8TD16 824 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 HNRNPLLQ8WVV9 542 aaKnown RBP9.43□□□□□ -0.9
ATG4A-201ENST00000343524 GOLGA1Q92805 767 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 DDX11Q96FC9 970 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 LRRCC1Q9C099 1032 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 GBP3Q9H0R5 595 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 STAP2Q9UGK3 403 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 SUFUQ9UMX1 484 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 XRN1Q8IZH2 1706 aaKnown RBP9.43□□□□□ -0.9
ATG4A-201ENST00000343524 ARHGEF28Q8N1W1 1705 aaKnown RBP9.43□□□□□ -0.9
ATG4A-201ENST00000343524 SGSM2O43147 1006 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 TSGA10IPQ3SY00 556 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 HSP90B2PQ58FF3 399 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 E4F1Q66K89 784 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-201ENST00000343524 DHX37Q8IY37 1157 aaKnown RBP9.43□□□□□ -0.9
ATG4A-201ENST00000343524 FBXO22Q8NEZ5 403 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 STAG1Q8WVM7 1258 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 TM6SF1Q9BZW5 370 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 LMTK2Q8IWU2 1503 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 PPLO60437 1756 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 CEP350Q5VT06 3117 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 RIMBP2O15034 1052 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 GRIPAP1Q4V328 841 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 RUFY3Q7L099 469 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 HDXQ7Z353 690 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 RILPL2Q969X0 211 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 FUT8Q9BYC5 575 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 ZSWIM6Q9HCJ5 1215 aa9.42□□□□□ -0.9
ATG4A-201ENST00000343524 MYO5BQ9ULV0 1848 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 MAP2K7O14733 419 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 PPFIA4O75335 1185 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 SASH3O75995 380 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 SEC31AO94979 1220 aaKnown RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 DNAJC21Q5F1R6 531 aaKnown RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 FAM71BQ8TC56 605 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 MBIPQ9NS73 344 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 CFAP45Q9UL16 551 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 SNX14Q9Y5W7 946 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 ARHGEF10O15013 1369 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 ADGRF5Q8IZF2 1346 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 PPP1R12AO14974 1030 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 URI1O94763 535 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 CCT4P50991 539 aaKnown RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 TUBB2AQ13885 445 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 ANKRD1Q15327 319 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 LARP1BQ659C4 914 aaKnown RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 TTLL5Q6EMB2 1281 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 GPR153Q6NV75 609 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 EGFL6Q8IUX8 553 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 CCDC83Q8IWF9 413 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 ERCC4Q92889 916 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 CCDC34Q96HJ3 373 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 BPIFA3Q9BQP9 254 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 TUBB2BQ9BVA1 445 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 A1CFQ9NQ94 594 aaKnown RBP9.41□□□□□ -0.9
ATG4A-201ENST00000343524 VPS18Q9P253 973 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 USP16Q9Y5T5 823 aa9.41□□□□□ -0.9
ATG4A-201ENST00000343524 TMEM131LA2VDJ0 1609 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 CRYBG1Q9Y4K1 1723 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 PATL2C9JE40 543 aaKnown RBP9.4□□□□□ -0.9
ATG4A-201ENST00000343524 APBB1O00213 710 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 TXLNAP40222 546 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 PPP2R3AQ06190 1150 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 APOBRQ0VD83 1088 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 GNL2Q13823 731 aaKnown RBP9.4□□□□□ -0.9
ATG4A-201ENST00000343524 SART3Q15020 963 aaKnown RBP9.4□□□□□ -0.9
ATG4A-201ENST00000343524 LONRF2Q1L5Z9 754 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 GORABQ5T7V8 394 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 LEO1Q8WVC0 666 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-201ENST00000343524 ORAI2Q96SN7 254 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 CARD6Q9BX69 1037 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 HYPKQ9NX55 129 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 CYP46A1Q9Y6A2 500 aa9.4□□□□□ -0.9
ATG4A-201ENST00000343524 RREB1Q92766 1687 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 TMCO5BA8MYB1 307 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 ERLIN2O94905 339 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 ERCC3P19447 782 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 PRKAR2BP31323 418 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 NLRP6P59044 892 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 NBPF14Q5TI25 921 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 CCDC73Q6ZRK6 1079 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 RSRC2Q7L4I2 434 aaKnown RBP9.39□□□□□ -0.91
ATG4A-201ENST00000343524 TSPYL6Q8N831 410 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 RUFY2Q8WXA3 655 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 PDRG1Q9NUG6 133 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 TERF2IPQ9NYB0 399 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 PARP3Q9Y6F1 533 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 A0A1W2PP64 1363 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 NALCNQ8IZF0 1738 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 N4BP2Q86UW6 1770 aaPredicted RBP9.39□□□□□ -0.91
ATG4A-201ENST00000343524 CBFA2T2O43439 604 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 MYO1BO43795 1136 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 C21orf2O43822 256 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 KINO60870 393 aaKnown RBP9.39□□□□□ -0.91
ATG4A-201ENST00000343524 USP5P45974 858 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 MNAT1P51948 309 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 ARID5BQ14865 1188 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 VARS2Q5ST30 1063 aaKnown RBP9.39□□□□□ -0.91
ATG4A-201ENST00000343524 LRCH2Q5VUJ6 765 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms