RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TTLL5Q6EMB2 1281 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 PI16Q6UXB8 463 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 HMG20BQ9P0W2 317 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 EIF6P56537 245 aaKnown RBP27.08■■□□□ 1.93
SDC3-202ENST00000339394 CHAF1AQ13111 956 aaPredicted RBP27.08■■□□□ 1.93
SDC3-202ENST00000339394 SKAP1Q86WV1 359 aa27.08■■□□□ 1.93
SDC3-202ENST00000339394 SPATA5Q8NB90 893 aa27.08■■□□□ 1.93
SDC3-202ENST00000339394 SBF1O95248 1867 aa27.07■■□□□ 1.92
SDC3-202ENST00000339394 USP17L3A6NCW0 530 aa27.07■■□□□ 1.92
SDC3-202ENST00000339394 USP17L4A6NCW7 530 aa27.07■■□□□ 1.92
SDC3-202ENST00000339394 STRIP1Q5VSL9 837 aa27.07■■□□□ 1.92
SDC3-202ENST00000339394 USP17L1Q7RTZ2 530 aa27.07■■□□□ 1.92
SDC3-202ENST00000339394 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.07■■□□□ 1.92
SDC3-202ENST00000339394 FBXW7Q969H0 707 aa27.07■■□□□ 1.92
SDC3-202ENST00000339394 BOLA2Q9H3K6 86 aa27.07■■□□□ 1.92
SDC3-202ENST00000339394 PI4K2BQ8TCG2 481 aa27.06■■□□□ 1.92
SDC3-202ENST00000339394 SNRKQ9NRH2 765 aa27.06■■□□□ 1.92
SDC3-202ENST00000339394 FAM205AQ6ZU69 1335 aa27.06■■□□□ 1.92
SDC3-202ENST00000339394 COL1A1P02452 1464 aaPredicted RBP27.06■■□□□ 1.92
SDC3-202ENST00000339394 PSMD14O00487 310 aa27.05■■□□□ 1.92
SDC3-202ENST00000339394 CIAPIN1Q6FI81 312 aa27.05■■□□□ 1.92
SDC3-202ENST00000339394 OSBPL3Q9H4L5 887 aa27.05■■□□□ 1.92
SDC3-202ENST00000339394 NDUFB9Q9Y6M9 179 aa27.05■■□□□ 1.92
SDC3-202ENST00000339394 ZNF541Q9H0D2 1346 aa27.05■■□□□ 1.92
SDC3-202ENST00000339394 ERC2O15083 957 aa27.05■■□□□ 1.92
SDC3-202ENST00000339394 DACT2Q5SW24 774 aa27.05■■□□□ 1.92
SDC3-202ENST00000339394 PDS5AQ29RF7 1337 aaKnown RBP27.05■■□□□ 1.92
SDC3-202ENST00000339394 ZC3H4Q9UPT8 1303 aaKnown RBP27.04■■□□□ 1.92
SDC3-202ENST00000339394 GLRX3O76003 335 aaKnown RBP27.04■■□□□ 1.92
SDC3-202ENST00000339394 VIL1P09327 827 aaKnown RBP27.04■■□□□ 1.92
SDC3-202ENST00000339394 ZAP70P43403 619 aa27.04■■□□□ 1.92
SDC3-202ENST00000339394 TNIP1Q15025 636 aa27.04■■□□□ 1.92
SDC3-202ENST00000339394 WDR66Q8TBY9 1149 aa27.03■■□□□ 1.92
SDC3-202ENST00000339394 HAUS7Q99871 368 aa27.03■■□□□ 1.92
SDC3-202ENST00000339394 MXD3Q9BW11 206 aa27.03■■□□□ 1.92
SDC3-202ENST00000339394 MFSD14BQ5SR56 506 aa27.02■■□□□ 1.92
SDC3-202ENST00000339394 CCDC88AQ3V6T2 1871 aa27.02■■□□□ 1.92
SDC3-202ENST00000339394 CYP2E1P05181 493 aaPredicted RBP27.01■■□□□ 1.92
SDC3-202ENST00000339394 TBC1D22AQ8WUA7 517 aa27.01■■□□□ 1.92
SDC3-202ENST00000339394 DNAJC2Q99543 621 aaKnown RBP27.01■■□□□ 1.92
SDC3-202ENST00000339394 GJA3Q9Y6H8 435 aa27.01■■□□□ 1.92
SDC3-202ENST00000339394 AOX1Q06278 1338 aa27.01■■□□□ 1.91
SDC3-202ENST00000339394 RSBN1LQ6PCB5 846 aaPredicted RBP27.01■■□□□ 1.91
SDC3-202ENST00000339394 CERS5Q8N5B7 392 aa27.01■■□□□ 1.91
SDC3-202ENST00000339394 ZBTB12Q9Y330 459 aaPredicted RBP27.01■■□□□ 1.91
SDC3-202ENST00000339394 SCN9AQ15858 1988 aa27■■□□□ 1.91
SDC3-202ENST00000339394 TBC1D9Q6ZT07 1266 aa27■■□□□ 1.91
SDC3-202ENST00000339394 GPC2Q8N158 579 aa27■■□□□ 1.91
SDC3-202ENST00000339394 ANTXR1Q9H6X2 564 aa27■■□□□ 1.91
SDC3-202ENST00000339394 CHD4Q14839 1912 aa27■■□□□ 1.91
SDC3-202ENST00000339394 SALL1Q9NSC2 1324 aa26.99■■□□□ 1.91
SDC3-202ENST00000339394 RGS3P49796 1198 aa26.99■■□□□ 1.91
SDC3-202ENST00000339394 FKBP1AP62942 108 aaKnown RBP26.99■■□□□ 1.91
SDC3-202ENST00000339394 DPY19L2Q6NUT2 758 aa26.99■■□□□ 1.91
SDC3-202ENST00000339394 EDC3Q96F86 508 aaKnown RBP26.99■■□□□ 1.91
SDC3-202ENST00000339394 ABCF2Q9UG63 623 aa26.99■■□□□ 1.91
SDC3-202ENST00000339394 DICER1Q9UPY3 1922 aaKnown RBP26.99■■□□□ 1.91
SDC3-202ENST00000339394 GOLIM4O00461 696 aa26.98■■□□□ 1.91
SDC3-202ENST00000339394 DDNO94850 711 aaPredicted RBP26.98■■□□□ 1.91
SDC3-202ENST00000339394 GRIK5Q16478 980 aa26.97■■□□□ 1.91
SDC3-202ENST00000339394 PAG1Q9NWQ8 432 aa26.97■■□□□ 1.91
SDC3-202ENST00000339394 GLTPD2A6NH11 291 aa26.97■■□□□ 1.91
SDC3-202ENST00000339394 MAP4K4O95819 1239 aaPredicted RBP26.97■■□□□ 1.91
SDC3-202ENST00000339394 ZGPATQ8N5A5 531 aaKnown RBP26.97■■□□□ 1.91
SDC3-202ENST00000339394 GMLQ99445 158 aa26.97■■□□□ 1.91
SDC3-202ENST00000339394 MYO3BQ8WXR4 1341 aa26.96■■□□□ 1.91
SDC3-202ENST00000339394 PRDX5P30044 214 aa26.96■■□□□ 1.91
SDC3-202ENST00000339394 AGBL3Q8NEM8 1001 aa26.96■■□□□ 1.91
SDC3-202ENST00000339394 PIH1D3Q9NQM4 214 aaKnown RBP26.96■■□□□ 1.91
SDC3-202ENST00000339394 TIAM2Q8IVF5 1701 aa26.95■■□□□ 1.9
SDC3-202ENST00000339394 TTF1Q15361 905 aaPredicted RBP26.95■■□□□ 1.9
SDC3-202ENST00000339394 SUGT1Q9Y2Z0 365 aa26.95■■□□□ 1.9
SDC3-202ENST00000339394 RPS12P25398 132 aaKnown RBP26.94■■□□□ 1.9
SDC3-202ENST00000339394 GMPSP49915 693 aaPredicted RBP26.94■■□□□ 1.9
SDC3-202ENST00000339394 KIAA0825Q8IV33 1275 aa26.94■■□□□ 1.9
SDC3-202ENST00000339394 LRP2BPQ9P2M1 347 aa26.94■■□□□ 1.9
SDC3-202ENST00000339394 F8W031 263 aaPredicted RBP26.93■■□□□ 1.9
SDC3-202ENST00000339394 LDHBP07195 334 aaKnown RBP26.93■■□□□ 1.9
SDC3-202ENST00000339394 TTC22Q5TAA0 569 aa26.93■■□□□ 1.9
SDC3-202ENST00000339394 DPF2Q92785 391 aa26.93■■□□□ 1.9
SDC3-202ENST00000339394 AKAP11Q9UKA4 1901 aa26.93■■□□□ 1.9
SDC3-202ENST00000339394 GSPT1P15170 499 aaKnown RBP26.92■■□□□ 1.9
SDC3-202ENST00000339394 SPTY2D1Q68D10 685 aaPredicted RBP26.92■■□□□ 1.9
SDC3-202ENST00000339394 ERICH6Q7L0X2 663 aa26.92■■□□□ 1.9
SDC3-202ENST00000339394 SCNN1DP51172 638 aa26.92■■□□□ 1.9
SDC3-202ENST00000339394 TTF2Q9UNY4 1162 aaKnown RBP26.92■■□□□ 1.9
SDC3-202ENST00000339394 IDH1O75874 414 aaKnown RBP26.91■■□□□ 1.9
SDC3-202ENST00000339394 RAI14Q9P0K7 980 aa26.91■■□□□ 1.9
SDC3-202ENST00000339394 TRIM6-TRIM34B2RNG4 842 aa26.9■■□□□ 1.9
SDC3-202ENST00000339394 USP17L8P0C7I0 530 aa26.9■■□□□ 1.9
SDC3-202ENST00000339394 L3MBTL3Q96JM7 780 aaPredicted RBP26.9■■□□□ 1.9
SDC3-202ENST00000339394 OGFOD1Q8N543 542 aa26.89■■□□□ 1.9
SDC3-202ENST00000339394 KBTBD3Q8NAB2 608 aa26.89■■□□□ 1.9
SDC3-202ENST00000339394 EVI5LQ96CN4 794 aa26.89■■□□□ 1.9
SDC3-202ENST00000339394 CNOT7Q9UIV1 285 aaKnown RBP26.89■■□□□ 1.9
SDC3-202ENST00000339394 MECOMQ03112 1051 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 MAP3K12Q12852 859 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 DZIP1Q86YF9 867 aaKnown RBP26.88■■□□□ 1.89
SDC3-202ENST00000339394 RILPL2Q969X0 211 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 NSUN4Q96CB9 384 aaKnown RBP26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms