RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 KCNJ4P48050 445 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 UBE4AQ14139 1066 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 MCMDC2Q4G0Z9 681 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 VPS53Q5VIR6 699 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 PRPF40BQ6NWY9 871 aaKnown RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 ZNF579Q8NAF0 562 aaKnown RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 MAP4K1Q92918 833 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 FAM84BQ96KN1 310 aaPredicted RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 WWC3Q9ULE0 1092 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 SNX14Q9Y5W7 946 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 PARP3Q9Y6F1 533 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 ZNF804BA4D1E1 1349 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 CPA1P15085 419 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 HOXA10P31260 410 aaPredicted RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 NEK4P51957 841 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 GPSM2P81274 684 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 WASHC4Q2M389 1173 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 ADCK5Q3MIX3 580 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 SLC9C2Q5TAH2 1124 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 OLFM4Q6UX06 510 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 HSCBQ8IWL3 235 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 SNX21Q969T3 373 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 RBM17Q96I25 401 aaKnown RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 BRIP1Q9BX63 1249 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 ANKRD2Q9GZV1 360 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 PUS7LQ9H0K6 701 aaKnown RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 SLKQ9H2G2 1235 aaPredicted RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 SCUBE2Q9NQ36 999 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 ANKIB1Q9P2G1 1089 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 IRS2Q9Y4H2 1338 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 COL11A2P13942 1736 aaPredicted RBP4.97□□□□□ -1.61
MCF2-201ENST00000338585 A0A0G2JLW4 131 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 FOXP2O15409 715 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 EPB41L2O43491 1005 aaKnown RBP4.97□□□□□ -1.61
MCF2-201ENST00000338585 SRGNP10124 158 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 ADD2P35612 726 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 ANAPC15P60006 121 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 NECTIN1Q15223 517 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 CREB3L3Q68CJ9 461 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 ERICH6Q7L0X2 663 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 HELLSQ9NRZ9 838 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 FOXD4L1Q9NU39 408 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 JAG2Q9Y219 1238 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 SLC27A2O14975 620 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 PDE6AP16499 860 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 TTF1Q15361 905 aaPredicted RBP4.97□□□□□ -1.61
MCF2-201ENST00000338585 CAVIN4Q5BKX8 364 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 NOL8Q76FK4 1167 aaKnown RBP4.97□□□□□ -1.61
MCF2-201ENST00000338585 FBXO33Q7Z6M2 555 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 VPS37DQ86XT2 251 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 APPBP2Q92624 585 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 IL17RAQ96F46 866 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 CRAMP1Q96RY5 1269 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 NSFL1CQ9UNZ2 370 aaKnown RBP4.97□□□□□ -1.61
MCF2-201ENST00000338585 ZNF532Q9HCE3 1301 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 MYH7P12883 1935 aa4.97□□□□□ -1.61
MCF2-201ENST00000338585 TCRBV5S4A2TA0A5A2 114 aa4.96□□□□□ -1.61
MCF2-201ENST00000338585 K7ELQ4 463 aaPredicted RBP4.96□□□□□ -1.61
MCF2-201ENST00000338585 PPEF1O14829 653 aaPredicted RBP4.96□□□□□ -1.61
MCF2-201ENST00000338585 BBOX1O75936 387 aa4.96□□□□□ -1.61
MCF2-201ENST00000338585 ZFYP08048 801 aaPredicted RBP4.96□□□□□ -1.61
MCF2-201ENST00000338585 HSPD1P10809 573 aaKnown RBP4.96□□□□□ -1.61
MCF2-201ENST00000338585 TTLL5Q6EMB2 1281 aa4.96□□□□□ -1.61
MCF2-201ENST00000338585 MAGEB6Q8N7X4 407 aa4.96□□□□□ -1.61
MCF2-201ENST00000338585 KCNB2Q92953 911 aa4.96□□□□□ -1.61
MCF2-201ENST00000338585 JAKMIP1Q96N16 626 aaKnown RBP4.96□□□□□ -1.61
MCF2-201ENST00000338585 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.96□□□□□ -1.61
MCF2-201ENST00000338585 ABCF2Q9UG63 623 aa4.96□□□□□ -1.61
MCF2-201ENST00000338585 XDHP47989 1333 aa4.96□□□□□ -1.61
MCF2-201ENST00000338585 QSER1Q2KHR3 1735 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 GPAA1O43292 621 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 ST18O60284 1047 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 UFL1O94874 794 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 CYP21A2P08686 494 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 NPR1P16066 1061 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 CHRNA5P30532 468 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 HIBADHP31937 336 aaKnown RBP4.96□□□□□ -1.62
MCF2-201ENST00000338585 PDE6BP35913 854 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 CHAF1AQ13111 956 aaPredicted RBP4.96□□□□□ -1.62
MCF2-201ENST00000338585 LARP6Q9BRS8 491 aaKnown RBP4.96□□□□□ -1.62
MCF2-201ENST00000338585 GNL3LQ9NVN8 582 aaKnown RBP4.96□□□□□ -1.62
MCF2-201ENST00000338585 LRP2BPQ9P2M1 347 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 POLLQ9UGP5 575 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 TAOK2Q9UL54 1235 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 DOCK2Q92608 1830 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 FRAT2O75474 233 aaPredicted RBP4.96□□□□□ -1.62
MCF2-201ENST00000338585 CASTP20810 708 aaKnown RBP4.96□□□□□ -1.62
MCF2-201ENST00000338585 MAP3K12Q12852 859 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 UBE3CQ15386 1083 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 LRRFIP1Q32MZ4 808 aaKnown RBP4.96□□□□□ -1.62
MCF2-201ENST00000338585 ADGRA1Q86SQ6 560 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 TICAM2Q86XR7 235 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 C2CD5Q86YS7 1000 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 TBC1D16Q8TBP0 767 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 ZNF384Q8TF68 577 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 ZNF622Q969S3 477 aaKnown RBP eCLIP4.96□□□□□ -1.62
MCF2-201ENST00000338585 TCEANC2Q96MN5 208 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 DSCC1Q9BVC3 393 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 LEMD3Q9Y2U8 911 aa4.96□□□□□ -1.62
MCF2-201ENST00000338585 MBD4O95243 580 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms