RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TXNRD3Q86VQ6 643 aa17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 VPS37DQ86XT2 251 aa17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 TDRD7Q8NHU6 1098 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 KCNB2Q92953 911 aa17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 TCRBV5S4A2TA0A5A2 114 aa17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 IL1R1P14778 569 aa17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 TGFB2P61812 414 aa17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 MAP3K12Q12852 859 aa17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 MAP4K1Q92918 833 aa17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 ZNF622Q969S3 477 aaKnown RBP eCLIP17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 RTFDC1Q9BY42 306 aaPredicted RBP17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 POLLQ9UGP5 575 aa17.96■□□□□ 0.47
CCDC88C-202ENST00000334448 MAST3O60307 1309 aa17.96■□□□□ 0.46
CCDC88C-202ENST00000334448 KIAA1551Q9HCM1 1747 aa17.95■□□□□ 0.46
CCDC88C-202ENST00000334448 ZBTB7AO95365 584 aa17.95■□□□□ 0.46
CCDC88C-202ENST00000334448 PDE6AP16499 860 aa17.95■□□□□ 0.46
CCDC88C-202ENST00000334448 CHRNA5P30532 468 aa17.95■□□□□ 0.46
CCDC88C-202ENST00000334448 ZNF589Q86UQ0 364 aaPredicted RBP17.95■□□□□ 0.46
CCDC88C-202ENST00000334448 MPNDQ8N594 471 aa17.95■□□□□ 0.46
CCDC88C-202ENST00000334448 TMX4Q9H1E5 349 aaPredicted RBP17.95■□□□□ 0.46
CCDC88C-202ENST00000334448 OSBP2Q969R2 916 aa17.94■□□□□ 0.46
CCDC88C-202ENST00000334448 IPO9Q96P70 1041 aaKnown RBP17.94■□□□□ 0.46
CCDC88C-202ENST00000334448 CHGBP05060 677 aa17.93■□□□□ 0.46
CCDC88C-202ENST00000334448 KCNA3P22001 575 aa17.93■□□□□ 0.46
CCDC88C-202ENST00000334448 RABEP1Q15276 862 aa17.93■□□□□ 0.46
CCDC88C-202ENST00000334448 WASHC4Q2M389 1173 aa17.93■□□□□ 0.46
CCDC88C-202ENST00000334448 SLC9C2Q5TAH2 1124 aa17.93■□□□□ 0.46
CCDC88C-202ENST00000334448 DPP8Q6V1X1 898 aaPredicted RBP17.93■□□□□ 0.46
CCDC88C-202ENST00000334448 DSCC1Q9BVC3 393 aa17.93■□□□□ 0.46
CCDC88C-202ENST00000334448 IDH1O75874 414 aaKnown RBP17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 PTGER2P43116 358 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 PTH1RQ03431 593 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 NECTIN1Q15223 517 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 ZGPATQ8N5A5 531 aaKnown RBP17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 TTLL6Q8N841 843 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 WDR66Q8TBY9 1149 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 SNX21Q969T3 373 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 EYA3Q99504 573 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 COA1Q9GZY4 146 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 CD209Q9NNX6 404 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 WWC3Q9ULE0 1092 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 CD2APQ9Y5K6 639 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 FAM205AQ6ZU69 1335 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 MYH7P12883 1935 aa17.92■□□□□ 0.46
CCDC88C-202ENST00000334448 SLX4Q8IY92 1834 aa17.91■□□□□ 0.46
CCDC88C-202ENST00000334448 M0R2C6 588 aa17.91■□□□□ 0.46
CCDC88C-202ENST00000334448 TSGA10IPQ3SY00 556 aa17.91■□□□□ 0.46
CCDC88C-202ENST00000334448 SEC62Q99442 399 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-202ENST00000334448 U3KPZ7 1027 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-202ENST00000334448 ZNF532Q9HCE3 1301 aa17.91■□□□□ 0.46
CCDC88C-202ENST00000334448 MAST2Q6P0Q8 1798 aa17.9■□□□□ 0.46
CCDC88C-202ENST00000334448 C6orf229H3BNL8 230 aa17.9■□□□□ 0.46
CCDC88C-202ENST00000334448 DPEP1P16444 411 aa17.9■□□□□ 0.46
CCDC88C-202ENST00000334448 PALD1Q9ULE6 856 aa17.9■□□□□ 0.46
CCDC88C-202ENST00000334448 IQSEC3Q9UPP2 1182 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-202ENST00000334448 ATF5Q9Y2D1 282 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-202ENST00000334448 RBM8AQ9Y5S9 174 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-202ENST00000334448 CACNA1SQ13698 1873 aa17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 SOGA3Q5TF21 947 aa17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 SPTY2D1Q68D10 685 aaPredicted RBP17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 SUPT20HQ8NEM7 779 aa17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 GPR101Q96P66 508 aaPredicted RBP17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 PUS7LQ9H0K6 701 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 LRP2BPQ9P2M1 347 aa17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 ZMYM6O95789 1325 aa17.89■□□□□ 0.45
CCDC88C-202ENST00000334448 FOXP2O15409 715 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 GPAA1O43292 621 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 FRAT2O75474 233 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 HSPD1P10809 573 aaKnown RBP17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 SLFNL1Q499Z3 407 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 CCDC93Q567U6 631 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 OLFM4Q6UX06 510 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 CCDC129Q6ZRS4 1044 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 MAGEB6Q8N7X4 407 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 TBC1D22AQ8WUA7 517 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 PSMD1Q99460 953 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 TM6SF1Q9BZW5 370 aa17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 ZC3H12CQ9C0D7 883 aaKnown RBP17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 RPAP1Q9BWH6 1393 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-202ENST00000334448 BECN1Q14457 450 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 RNF20Q5VTR2 975 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 CREB3L3Q68CJ9 461 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 ERICH6Q7L0X2 663 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 RTKN2Q8IZC4 609 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 ZNF384Q8TF68 577 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 NSUN4Q96CB9 384 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 VPS33BQ9H267 617 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 SUGT1Q9Y2Z0 365 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 SNX14Q9Y5W7 946 aa17.87■□□□□ 0.45
CCDC88C-202ENST00000334448 MYH13Q9UKX3 1938 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 A0A0G2JLW4 131 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 SLC27A2O14975 620 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 KIAA2012Q0VF49 1180 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 ALX1Q15699 326 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 PODNQ7Z5L7 613 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 STRBPQ96SI9 672 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 PIM2Q9P1W9 311 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 ABCF2Q9UG63 623 aa17.86■□□□□ 0.45
CCDC88C-202ENST00000334448 PSDA5PKW4 1024 aaPredicted RBP17.85■□□□□ 0.45
CCDC88C-202ENST00000334448 ZKSCAN1P17029 563 aaPredicted RBP17.85■□□□□ 0.45
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