RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 HMGN5P82970 282 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 ZNF512BQ96KM6 892 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 SEC31BQ9NQW1 1179 aa17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 DACT1Q9NYF0 836 aa17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 SALL1Q9NSC2 1324 aa17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 CEBPZQ03701 1054 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 PUM3Q15397 648 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 MB21D2Q8IYB1 491 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 PGBD1Q96JS3 809 aa17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 ZSCAN16Q9H4T2 348 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-201ENST00000331433 PRC1O43663 620 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 GUCY1B3Q02153 619 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 UVSSAQ2YD98 709 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 NAP1L5Q96NT1 182 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 NUP62CLQ9H1M0 184 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 WWC3Q9ULE0 1092 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 MYH14Q7Z406 1995 aaKnown RBP17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 ZNF213O14771 459 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 CAMTA2O94983 1202 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 ARID4AP29374 1257 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 ANTXR2P58335 489 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 TTF1Q15361 905 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 NAA16Q6N069 864 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 RAB11FIP4Q86YS3 637 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 LPIN2Q92539 896 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 FTOQ9C0B1 505 aaKnown RBP eCLIP17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 NRAPQ86VF7 1730 aa17.48■□□□□ 0.39
CLCNKA-201ENST00000331433 FGFR2P21802 821 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 MCM5P33992 734 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 ZSCAN25Q6NSZ9 544 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 UTP14AQ9BVJ6 771 aaKnown RBP17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 CCDC39Q9UFE4 941 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 DENND2AQ9ULE3 1009 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 THRAP3Q9Y2W1 955 aaKnown RBP17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 MROH5Q6ZUA9 1318 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 ZNF532Q9HCE3 1301 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 LRP5O75197 1615 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 PDE6AP16499 860 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 FBXL16Q8N461 479 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 NCOA7Q8NI08 942 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 BICD2Q8TD16 824 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 NBPF3Q9H094 633 aa17.47■□□□□ 0.39
CLCNKA-201ENST00000331433 CARMIL3Q8ND23 1372 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 PTMAP06454 111 aaKnown RBP17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 ADD1P35611 737 aaKnown RBP17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 EVCP57679 992 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 MAP3K11Q16584 847 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 RALYLQ86SE5 291 aaKnown RBP17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 CKAP2LQ8IYA6 745 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 MPNDQ8N594 471 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 MPHOSPH8Q99549 860 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 ZKSCAN5Q9Y2L8 839 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 KIF3AQ9Y496 699 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 KLF18A0A0U1RQI7 1052 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 APPP05067 770 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 FDPSP14324 419 aaKnown RBP17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 NKX2-3Q8TAU0 364 aa17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 NIP7Q9Y221 180 aaKnown RBP eCLIP17.46■□□□□ 0.39
CLCNKA-201ENST00000331433 SPATA31A5Q5VU36 1347 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 SPATA31A7Q8IWB4 1347 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 KCNQ2O43526 872 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 NR1I2O75469 434 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 ADCY5O95622 1261 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 UQCRFS1P1P0C7P4 283 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 CCDC192P0DO97 292 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 UBE3CQ15386 1083 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 AK7Q96M32 723 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 CFAP45Q9UL16 551 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 ATRNO75882 1429 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 GOLGA8BA8MQT2 603 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 TBC1D10CQ8IV04 446 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 TNMDQ9H2S6 317 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 PHLPP1O60346 1717 aa17.45■□□□□ 0.38
CLCNKA-201ENST00000331433 TCRBV5S4A2TA0A5A2 114 aa17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 SLC5A1P13866 664 aa17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 PLCB2Q00722 1185 aa17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 RASGRF1Q13972 1273 aa17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 SPATA5Q8NB90 893 aa17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 HPS5Q9UPZ3 1129 aa17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 MYH15Q9Y2K3 1946 aa17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 DDX19AQ9NUU7 478 aaKnown RBP17.44■□□□□ 0.38
CLCNKA-201ENST00000331433 KDM4AO75164 1064 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 NTSR2O95665 410 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 OTUD7BQ6GQQ9 843 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 ILDR1Q86SU0 546 aaPredicted RBP17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 USP28Q96RU2 1077 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 TYRO3Q06418 890 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 PARP10Q53GL7 1025 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 KLHL34Q8N239 644 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 AIDAQ96BJ3 306 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 CLSTN2Q9H4D0 955 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 MRVI1Q9Y6F6 885 aa17.43■□□□□ 0.38
CLCNKA-201ENST00000331433 DDX60Q8IY21 1712 aaKnown RBP17.42■□□□□ 0.38
CLCNKA-201ENST00000331433 AP5Z1O43299 807 aa17.42■□□□□ 0.38
CLCNKA-201ENST00000331433 CCDC152Q4G0S7 254 aa17.42■□□□□ 0.38
CLCNKA-201ENST00000331433 MAGEB6Q8N7X4 407 aa17.42■□□□□ 0.38
CLCNKA-201ENST00000331433 ARAP2Q8WZ64 1704 aa17.42■□□□□ 0.38
CLCNKA-201ENST00000331433 TRDNQ13061 729 aa17.42■□□□□ 0.38
CLCNKA-201ENST00000331433 STRBPQ96SI9 672 aaKnown RBP17.42■□□□□ 0.38
CLCNKA-201ENST00000331433 ZNF500O60304 480 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms