RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 USP48Q86UV5 1035 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 NUTM1Q86Y26 1132 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 LRRN4CLQ8ND94 238 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 CACTINQ8WUQ7 758 aaKnown RBP7.68□□□□□ -1.18
ZNF540-201ENST00000316433 BAG1Q99933 345 aaPredicted RBP7.68□□□□□ -1.18
ZNF540-201ENST00000316433 HMG20BQ9P0W2 317 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 CLIP2Q9UDT6 1046 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 KIAA1551Q9HCM1 1747 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 ACEP12821 1306 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 DOCK2Q92608 1830 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 AP1G2O75843 785 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 ZSCAN22P10073 491 aaPredicted RBP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 ABCD1P33897 745 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 RBBP5Q15291 538 aaKnown RBP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 PDCD2Q16342 344 aaPredicted RBP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 UBXN4Q92575 508 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 MEIS3Q99687 375 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 EME2A4GXA9 379 aaPredicted RBP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 CCP110O43303 1012 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 PPFIA2O75334 1257 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 SNUPNO95149 360 aaKnown RBP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 CCDC93Q567U6 631 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 CC2D1AQ6P1N0 951 aaPredicted RBP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 CADPS2Q86UW7 1296 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 GDPD2Q9HCC8 539 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 ECM29Q5VYK3 1845 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 TMCO5BA8MYB1 307 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 H3BQF6 201 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 NEMFO60524 1076 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 RTN2O75298 545 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 CHGAP10645 457 aaKnown RBP7.67□□□□□ -1.18
ZNF540-201ENST00000316433 ANKRD1Q15327 319 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 SLC5A9Q2M3M2 681 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 TBC1D25Q3MII6 688 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 FBXW10Q5XX13 1052 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 ANKRD18AQ8IVF6 992 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 MKL1Q969V6 931 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 DDX11Q96FC9 970 aa7.67□□□□□ -1.18
ZNF540-201ENST00000316433 MYO1BO43795 1136 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 PPFIA4O75335 1185 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 RDXP35241 583 aaKnown RBP7.66□□□□□ -1.18
ZNF540-201ENST00000316433 MRPL12P52815 198 aaKnown RBP7.66□□□□□ -1.18
ZNF540-201ENST00000316433 FLIIQ13045 1269 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 MICAL1Q8TDZ2 1067 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 TSPAN18Q96SJ8 248 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 ABCA3Q99758 1704 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 GNAT3A8MTJ3 354 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 MAGEA8P43361 318 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 LIG3P49916 1009 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 DDR1Q08345 913 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 CCDC158Q5M9N0 1113 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 GIMAP6Q6P9H5 292 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 NFXL1Q6ZNB6 911 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 ELOA2Q8IYF1 753 aaPredicted RBP7.66□□□□□ -1.18
ZNF540-201ENST00000316433 RPUSD2Q8IZ73 545 aaKnown RBP7.66□□□□□ -1.18
ZNF540-201ENST00000316433 RUFY2Q8WXA3 655 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 VPS18Q9P253 973 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 LIMCH1Q9UPQ0 1083 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 DLEC1Q9Y238 1755 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 WNK3Q9BYP7 1800 aa7.66□□□□□ -1.18
ZNF540-201ENST00000316433 PALLDQ8WX93 1383 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 GLRX3O76003 335 aaKnown RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 ECM2O94769 699 aaPredicted RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 ECEL1O95672 775 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 SETSIPP0DME0 302 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 POLD1P28340 1107 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 ZNF75DP51815 510 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 PREPLQ4J6C6 727 aaPredicted RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 PLA2G4DQ86XP0 818 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 DRAXINQ8NBI3 349 aaPredicted RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 FAM200AQ8TCP9 573 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 ARHGEF1Q92888 912 aaKnown RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 AGXT2Q9BYV1 514 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 ODF2LQ9ULJ1 636 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 ZNF232Q9UNY5 417 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 WDR19Q8NEZ3 1342 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 PDCP20941 246 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 TAF7Q15545 349 aaPredicted RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 TDRD7Q8NHU6 1098 aaKnown RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 BPIFA3Q9BQP9 254 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 LLPHQ9BRT6 129 aaKnown RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 USP44Q9H0E7 712 aa7.65□□□□□ -1.18
ZNF540-201ENST00000316433 CHCHD3Q9NX63 227 aaKnown RBP7.65□□□□□ -1.18
ZNF540-201ENST00000316433 ADCY9O60503 1353 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 NID2Q14112 1375 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 F13A1P00488 732 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 CCDC192P0DO97 292 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 GCKP35557 465 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 LRRC8AQ8IWT6 810 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 CNTROBQ8N137 903 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 CCAR2Q8N163 923 aaKnown RBP7.65□□□□□ -1.19
ZNF540-201ENST00000316433 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.65□□□□□ -1.19
ZNF540-201ENST00000316433 FUT8Q9BYC5 575 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 TRIM5Q9C035 493 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 ARFGAP3Q9NP61 516 aa7.65□□□□□ -1.19
ZNF540-201ENST00000316433 A0A1B0GUA9 196 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 SKILP12757 684 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 EVCP57679 992 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms