RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CARD6Q9BX69 1037 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 DHX58Q96C10 678 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 MIER3Q7Z3K6 550 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 CCDC110Q8TBZ0 833 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 GUCY2FP51841 1108 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 RASEFQ8IZ41 740 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 SNRKQ9NRH2 765 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 SH3BP5O60239 455 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 RRP15Q9Y3B9 282 aaKnown RBP9.83□□□□□ -0.84
USF3-201ENST00000316407 MX2P20592 715 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 TXNDC16Q9P2K2 825 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 TEX11Q8IYF3 940 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 TBCAO75347 108 aaKnown RBP9.83□□□□□ -0.84
USF3-201ENST00000316407 DBN1Q16643 649 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 PHLDB2Q86SQ0 1253 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 SEC24BO95487 1268 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 GMNNO75496 209 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 HEATR3Q7Z4Q2 680 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 VPS52Q8N1B4 723 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 ANKRD24Q8TF21 1146 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 KIF21AQ7Z4S6 1674 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 CRCPO75575 148 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 RLBP1P12271 317 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 PDE11AQ9HCR9 933 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 RAPGEF1Q13905 1077 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 CABP1Q9NZU7 370 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 A0A1B0GVL5 298 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 CCDC172P0C7W6 258 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 VSIG1Q86XK7 387 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 AKR1B15C9JRZ8 316 aaPredicted RBP9.82□□□□□ -0.84
USF3-201ENST00000316407 SPTLC2O15270 562 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 Q6ZUG5 572 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 ALG1Q9BT22 464 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 RPGRIP1LQ68CZ1 1315 aa9.82□□□□□ -0.84
USF3-201ENST00000316407 ATP2A2P16615 1042 aaKnown RBP9.81□□□□□ -0.84
USF3-201ENST00000316407 TUBB4BP68371 445 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 MFSD6Q6ZSS7 791 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 CUL5Q93034 780 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 SPECC1L-ADORA2AF8WAN1 911 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 BRF1Q92994 677 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 EVI5LQ96CN4 794 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 SNCBQ16143 134 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 ERCC6LQ2NKX8 1250 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 NEK1Q96PY6 1258 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 RASA3Q14644 834 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 ESCO1Q5FWF5 840 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 PPP1R21Q6ZMI0 780 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 CDK19Q9BWU1 502 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 STMN1P16949 149 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 CRACR2BQ8N4Y2 399 aaPredicted RBP9.81□□□□□ -0.84
USF3-201ENST00000316407 ZMAT2Q96NC0 199 aaKnown RBP9.81□□□□□ -0.84
USF3-201ENST00000316407 LRRC45Q96CN5 670 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 FAF1Q9UNN5 650 aaPredicted RBP9.81□□□□□ -0.84
USF3-201ENST00000316407 E2F5Q15329 346 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 AKAP2Q9Y2D5 859 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 KLF18A0A0U1RQI7 1052 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 ARFGAP2Q8N6H7 521 aa9.81□□□□□ -0.84
USF3-201ENST00000316407 JARID2Q92833 1246 aaPredicted RBP9.81□□□□□ -0.84
USF3-201ENST00000316407 SLC24A3Q9HC58 644 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 CALCOCO2Q13137 446 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 NFE2L2Q16236 605 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 PROCA1Q8NCQ7 364 aaPredicted RBP9.8□□□□□ -0.84
USF3-201ENST00000316407 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.8□□□□□ -0.84
USF3-201ENST00000316407 ARHGAP42A6NI28 874 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 CNGA4Q8IV77 575 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 PDCD7Q8N8D1 485 aaKnown RBP9.8□□□□□ -0.84
USF3-201ENST00000316407 CAPS2Q9BXY5 557 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 DNAI2Q9GZS0 605 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 DCAF17Q5H9S7 520 aaPredicted RBP9.8□□□□□ -0.84
USF3-201ENST00000316407 DENND2CQ68D51 928 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 BAG2O95816 211 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.8□□□□□ -0.84
USF3-201ENST00000316407 MYD88Q99836 296 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 SYNRGQ9UMZ2 1314 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 TAF7Q15545 349 aaPredicted RBP9.8□□□□□ -0.84
USF3-201ENST00000316407 INF2Q27J81 1249 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 IGSF22Q8N9C0 903 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 RPGRQ92834 1020 aaKnown RBP9.8□□□□□ -0.84
USF3-201ENST00000316407 GNAT3A8MTJ3 354 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 IGHMBP2P38935 993 aaKnown RBP9.8□□□□□ -0.84
USF3-201ENST00000316407 IFT20Q8IY31 132 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 PSMA7O14818 248 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 PRPHP41219 470 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 GNGT1P63211 74 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 PPP2R5CQ13362 524 aa9.8□□□□□ -0.84
USF3-201ENST00000316407 ATP5DP30049 168 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 CCT5P48643 541 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 BEND3Q5T5X7 828 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 ZNF287Q9HBT7 754 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 I3L4J1 428 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 PPP2R5DQ14738 602 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 PTPROQ16827 1216 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 SEL1L2Q5TEA6 688 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 SMARCC2Q8TAQ2 1214 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 CC2D2AQ9P2K1 1620 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 HIP1RO75146 1068 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 CLUL1Q15846 466 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 LMBR1Q8WVP7 490 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 PTCD1O75127 700 aaKnown RBP9.79□□□□□ -0.84
USF3-201ENST00000316407 GADD45BO75293 160 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms