RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 SEPT12Q8IYM1 358 aa7.78□□□□□ -1.16
USP47-201ENST00000305481 BRF1Q92994 677 aa7.78□□□□□ -1.16
USP47-201ENST00000305481 AGXT2Q9BYV1 514 aa7.78□□□□□ -1.16
USP47-201ENST00000305481 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP47-201ENST00000305481 GDPD2Q9HCC8 539 aa7.78□□□□□ -1.16
USP47-201ENST00000305481 ZNF532Q9HCE3 1301 aa7.78□□□□□ -1.16
USP47-201ENST00000305481 TAF1LQ8IZX4 1826 aa7.78□□□□□ -1.16
USP47-201ENST00000305481 F13A1P00488 732 aa7.77□□□□□ -1.16
USP47-201ENST00000305481 HMGB1P09429 215 aaKnown RBP7.77□□□□□ -1.16
USP47-201ENST00000305481 PDE6AP16499 860 aa7.77□□□□□ -1.16
USP47-201ENST00000305481 UBE3CQ15386 1083 aa7.77□□□□□ -1.16
USP47-201ENST00000305481 GTF3C6Q969F1 213 aa7.77□□□□□ -1.16
USP47-201ENST00000305481 LRRC4BQ9NT99 713 aa7.77□□□□□ -1.16
USP47-201ENST00000305481 HAND2P61296 217 aa7.77□□□□□ -1.17
USP47-201ENST00000305481 CAVIN1Q6NZI2 390 aaKnown RBP7.77□□□□□ -1.17
USP47-201ENST00000305481 CHST3Q7LGC8 479 aa7.77□□□□□ -1.17
USP47-201ENST00000305481 NBPF3Q9H094 633 aa7.77□□□□□ -1.17
USP47-201ENST00000305481 TCHHQ07283 1943 aa7.77□□□□□ -1.17
USP47-201ENST00000305481 GADD45BO75293 160 aaPredicted RBP7.77□□□□□ -1.17
USP47-201ENST00000305481 CCDC24Q8N4L8 307 aa7.77□□□□□ -1.17
USP47-201ENST00000305481 CELF1Q92879 486 aaKnown RBP7.77□□□□□ -1.17
USP47-201ENST00000305481 SETDB2Q96T68 719 aa7.77□□□□□ -1.17
USP47-201ENST00000305481 CDC5LQ99459 802 aaKnown RBP7.77□□□□□ -1.17
USP47-201ENST00000305481 BSDC1Q9NW68 430 aaPredicted RBP7.77□□□□□ -1.17
USP47-201ENST00000305481 RBM27Q9P2N5 1060 aaKnown RBP7.77□□□□□ -1.17
USP47-201ENST00000305481 RTCBQ9Y3I0 505 aaKnown RBP7.77□□□□□ -1.17
USP47-201ENST00000305481 COL24A1Q17RW2 1714 aa7.77□□□□□ -1.17
USP47-201ENST00000305481 JAK2O60674 1132 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 NCLP19338 710 aaKnown RBP7.76□□□□□ -1.17
USP47-201ENST00000305481 SCRN1Q12765 414 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 L1TD1Q5T7N2 865 aaKnown RBP7.76□□□□□ -1.17
USP47-201ENST00000305481 ZSCAN25Q6NSZ9 544 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 USP48Q86UV5 1035 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 ANKRD18AQ8IVF6 992 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 NKX2-3Q8TAU0 364 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 GPHNQ9NQX3 736 aaPredicted RBP7.76□□□□□ -1.17
USP47-201ENST00000305481 CTNNA3Q9UI47 895 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 TRPC5Q9UL62 973 aaPredicted RBP7.76□□□□□ -1.17
USP47-201ENST00000305481 CNPY2Q9Y2B0 182 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 A0A1B0GUL6 1792 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 DOCK2Q92608 1830 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 ZPR1O75312 459 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 APOBRQ0VD83 1088 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 ZSCAN23Q3MJ62 389 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 PANK2Q9BZ23 570 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 RTN4Q9NQC3 1192 aaKnown RBP7.76□□□□□ -1.17
USP47-201ENST00000305481 TMEM63CQ9P1W3 806 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 MINPP1Q9UNW1 487 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 C4BP0C0L5 1744 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 PFKFB2O60825 505 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 LARP1BQ659C4 914 aaKnown RBP7.76□□□□□ -1.17
USP47-201ENST00000305481 CDC37L1Q7L3B6 337 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 TMEM87AQ8NBN3 555 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 STRBPQ96SI9 672 aaKnown RBP7.76□□□□□ -1.17
USP47-201ENST00000305481 DENND2AQ9ULE3 1009 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 ZNF804BA4D1E1 1349 aa7.76□□□□□ -1.17
USP47-201ENST00000305481 CTDNEP1O95476 244 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 TM4SF1P30408 202 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 IMMTQ16891 758 aaKnown RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 FAM196AQ6ZSG2 479 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 NBPF5PQ86XG9 351 aaPredicted RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 FBXL16Q8N461 479 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 BCL11BQ9C0K0 894 aaPredicted RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 GRPEL1Q9HAV7 217 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 C4AP0C0L4 1744 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 VPS37CA5D8V6 355 aaPredicted RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 PHF14O94880 888 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 GTF2E1P29083 439 aaPredicted RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 GYG1P46976 350 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 MB21D2Q8IYB1 491 aaPredicted RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 MAGEB6Q8N7X4 407 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 NYXQ9GZU5 481 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 QTRT2Q9H974 415 aaKnown RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 IQSEC3Q9UPP2 1182 aaPredicted RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 COL1A1P02452 1464 aaPredicted RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 PDIA3P30101 505 aaKnown RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 MRE11P49959 708 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 EVCP57679 992 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 ANTXR2P58335 489 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 ZNF445P59923 1031 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 DNM1Q05193 864 aaKnown RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 TBC1D10CQ8IV04 446 aa7.75□□□□□ -1.17
USP47-201ENST00000305481 ISY1Q9ULR0 285 aaKnown RBP7.75□□□□□ -1.17
USP47-201ENST00000305481 ZNF213O14771 459 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 MAP3K12Q12852 859 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 TPTE2Q6XPS3 522 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 SMARCC2Q8TAQ2 1214 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 KLRK1P26718 216 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 RPS8P62241 208 aaKnown RBP7.74□□□□□ -1.17
USP47-201ENST00000305481 FGD1P98174 961 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 UBE4AQ14139 1066 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 TRAPPC3LQ5T215 181 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 SLC51AQ86UW1 340 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 FERMT3Q86UX7 667 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 NSUN7Q8NE18 718 aaKnown RBP7.74□□□□□ -1.17
USP47-201ENST00000305481 FAM84BQ96KN1 310 aaPredicted RBP7.74□□□□□ -1.17
USP47-201ENST00000305481 NLRP3Q96P20 1036 aa7.74□□□□□ -1.17
USP47-201ENST00000305481 NCOA5Q9HCD5 579 aaKnown RBP7.74□□□□□ -1.17
USP47-201ENST00000305481 EPB41L4AQ9HCS5 686 aaPredicted RBP7.74□□□□□ -1.17
USP47-201ENST00000305481 MBD4O95243 580 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms