RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SLC26A4O43511 780 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 ST5P78524 1137 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 GLE1Q53GS7 698 aaKnown RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC121Q6ZUS5 278 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 IPO4Q8TEX9 1081 aaKnown RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 TANGO6Q9C0B7 1094 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 PPCSQ9HAB8 311 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 NOS1P29475 1434 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 GOLGA8KD6RF30 607 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 SNX16P57768 344 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 ZNF713Q8N859 430 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 RTL9Q8NET4 1388 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 RPAP1Q9BWH6 1393 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 ABCA8O94911 1581 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 USP5P45974 858 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 UBE4AQ14139 1066 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 RBBP5Q15291 538 aaKnown RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 MAP7D1Q3KQU3 841 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 FOXD4L6Q3SYB3 417 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 FOXD4L3Q6VB84 417 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 FERMT2Q96AC1 680 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 STIM2Q9P246 746 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 CTNNA2P26232 953 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 ABCD1P33897 745 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 RNF168Q8IYW5 571 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 LZICQ8WZA0 190 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 USP32Q8NFA0 1604 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 PTPRTO14522 1441 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 PER1O15534 1290 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 KIF4AO95239 1232 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 MAN1A1P33908 653 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 MRPS25P82663 173 aaKnown RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 CACNA2D3Q8IZS8 1091 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 PPFIBP2Q8ND30 876 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 SMC1BQ8NDV3 1235 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 KIAA1524Q8TCG1 905 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 UGGT1Q9NYU2 1555 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 CAMSAP1Q5T5Y3 1602 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 SURF6O75683 361 aaKnown RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 TDO2P48775 406 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 RBM6P78332 1123 aaKnown RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 ATP2B2Q01814 1243 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 PLCB4Q15147 1175 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC129Q6ZRS4 1044 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 PHLDB2Q86SQ0 1253 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 KIRREL3Q8IZU9 778 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 CSRNP2Q9H175 543 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 DBF4Q9UBU7 674 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-201ENST00000303395 MAP3K15Q6ZN16 1313 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 PTCH1Q13635 1447 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 GOLGA8QA0A0J9YX86 632 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 GOLGA8OA6NCC3 632 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 GOLGA8NF8WBI6 632 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 EVCP57679 992 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 MYL5Q02045 173 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 NUTM2GQ5VZR2 741 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 ARHGAP18Q8N392 663 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 FAM81BQ96LP2 452 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 ZHX3Q9H4I2 956 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 IKBKGQ9Y6K9 419 aa5.92□□□□□ -1.46
SCN1A-201ENST00000303395 NCOA3Q9Y6Q9 1424 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 PPFIA2O75334 1257 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 DNAJC8O75937 253 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 ERCC5P28715 1186 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 PRKAR2BP31323 418 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 TPD52P55327 224 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 BIRC2Q13490 618 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC96Q2M329 555 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 FBF1Q8TES7 1133 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 SSH1Q8WYL5 1049 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 MTRF1LQ9UGC7 380 aaKnown RBP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 FAN1Q9Y2M0 1017 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 CROCC2H7BZ55 1655 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 TMEM266Q2M3C6 531 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 CFAP157Q5JU67 520 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 RNF187Q5TA31 235 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 SLF2Q8IX21 1173 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 PPP1R14CQ8TAE6 165 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 ESYT1Q9BSJ8 1104 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 CUEDC2Q9H467 287 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 FOXD4L1Q9NU39 408 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 HACD3Q9P035 362 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 MAGI2Q86UL8 1455 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 USP19O94966 1318 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 PSMC4P43686 418 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 TYRO3Q06418 890 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 MAP7Q14244 749 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC152Q4G0S7 254 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 DZIP1Q86YF9 867 aaKnown RBP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 C8orf76Q96K31 380 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 KRT23Q9C075 422 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 NEXMIFQ5QGS0 1516 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 DYTNA2CJ06 578 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 STX10O60499 249 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 PLIN1O60240 522 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 SAFB2Q14151 953 aaKnown RBP eCLIP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 HAUS4Q9H6D7 363 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 EHMT1Q9H9B1 1298 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 STRN4Q9NRL3 753 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 MYO5CQ9NQX4 1742 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms