RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 CSRNP2Q9H175 543 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 CDK13Q14004 1512 aaKnown RBP11.7□□□□□ -0.54
CLIP1-201ENST00000302528 SETSIPP0DME0 302 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 RFX1P22670 979 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 KRT79Q5XKE5 535 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 AOPEPQ8N6M6 819 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 GABPB2Q8TAK5 448 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-201ENST00000302528 BICDL2A1A5D9 508 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 TUBB4AP04350 444 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 RHOXF2BP0C7M4 288 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 TUBB4BP68371 445 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 RTN1Q16799 776 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 FMNL3Q8IVF7 1028 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 MRPS27Q92552 414 aaKnown RBP11.69□□□□□ -0.54
CLIP1-201ENST00000302528 RHOXF2Q9BQY4 288 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 VCXQ9H320 206 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 SPDYE3A6NKU9 549 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 ESR2Q92731 530 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 DHX58Q96C10 678 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 HMGB1P1B2RPK0 211 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-201ENST00000302528 UQCRFS1P1P0C7P4 283 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 UBXN1Q04323 297 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 PPP1R42Q7Z4L9 355 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 TMTC2Q8N394 836 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 SEPT10Q9P0V9 454 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLIP1-201ENST00000302528 PTPRKQ15262 1439 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 SLC8A3P57103 927 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 GABPAQ06546 454 aa11.69□□□□□ -0.54
CLIP1-201ENST00000302528 NOLC1Q14978 699 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLIP1-201ENST00000302528 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 BRF1Q92994 677 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ANKFY1Q9P2R3 1169 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 DBF4Q9UBU7 674 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ITIH3Q06033 890 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ZNF569Q5MCW4 686 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 MRRFQ96E11 262 aaKnown RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ZBTB21Q9ULJ3 1066 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 GBP1P32455 592 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ST5P78524 1137 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 KARSQ15046 597 aaKnown RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ALDH1L2Q3SY69 923 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ATAD2Q6PL18 1390 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 TROQ12816 1431 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 PRG4Q92954 1404 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ADAMTS2O95450 1211 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 RAPGEF1Q13905 1077 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ZSCAN23Q3MJ62 389 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 PRR16Q569H4 304 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 CEP128Q6ZU80 1094 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 MCUR1Q96AQ8 359 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 DDX27Q96GQ7 796 aaKnown RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 LZTFL1Q9NQ48 299 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 RPRD2Q5VT52 1461 aaKnown RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 STX10O60499 249 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 ECM2O94769 699 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-201ENST00000302528 PPP2R5CQ13362 524 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 C10orf67Q8IYJ2 551 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 CCDC26Q8TAB7 109 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 TBC1D2Q9BYX2 928 aa11.68□□□□□ -0.54
CLIP1-201ENST00000302528 CETN3O15182 167 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 GIGYF1O75420 1035 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-201ENST00000302528 ZNF131P52739 623 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 PICALMQ13492 652 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 OGFOD1Q8N543 542 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 USHBP1Q8N6Y0 703 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 GSDMBQ8TAX9 411 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 F8W031 263 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-201ENST00000302528 DAPK3O43293 454 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 ZSCAN22P10073 491 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-201ENST00000302528 MARCKSP29966 332 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-201ENST00000302528 ANKRD24Q8TF21 1146 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 ARHGEF2Q92974 986 aaKnown RBP11.67□□□□□ -0.54
CLIP1-201ENST00000302528 CNNM2Q9H8M5 875 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 KRT5P13647 590 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 SLC4A4Q9Y6R1 1079 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 C9orf84Q5VXU9 1444 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 CYP7A1P22680 504 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 PPP2R5DQ14738 602 aa11.67□□□□□ -0.54
CLIP1-201ENST00000302528 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 RFC4P35249 363 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 SLFN5Q08AF3 891 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 TSNAXIP1Q2TAA8 658 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 RILPL1Q5EBL4 403 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 FAM200AQ8TCP9 573 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 PPANQ9NQ55 473 aaKnown RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 TXNDC9O14530 226 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 BACH1O14867 736 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 STK10O94804 968 aaKnown RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 HPDP32754 393 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 CCDC62Q6P9F0 684 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 BIRC3Q13489 604 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 DCAF17Q5H9S7 520 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 WDR44Q5JSH3 913 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 USH1CQ9Y6N9 552 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 ABCC5O15440 1437 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 SPOPO43791 374 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 CNGA1P29973 690 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 KRT9P35527 623 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 TNNI2P48788 182 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms