RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 CCDC85AQ96PX6 553 aaPredicted RBP8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 WWC3Q9ULE0 1092 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 ANKRD31Q8N7Z5 1873 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 CACNA1FO60840 1977 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 LAMB2P55268 1798 aa8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 ERVV-1B6SEH8 477 aa8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 POLRMTO00411 1230 aaKnown RBP8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 NBPF7P0C2Y1 421 aaPredicted RBP8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 ERFEQ4G0M1 354 aa8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 RDH13Q8NBN7 331 aa8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 KCNV2Q8TDN2 545 aa8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 SUCLG2Q96I99 432 aa8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 SRCIN1Q9C0H9 1055 aa8.2□□□□□ -1.1
DEPDC4-201ENST00000299185 CEP350Q5VT06 3117 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 IPO8O15397 1037 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 HCLS1P14317 486 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 CASP7P55210 303 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 FUT2Q10981 343 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 GCKRQ14397 625 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 MVPQ14764 893 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 MSS51Q4VC12 460 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 METTL3Q86U44 580 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 LINS1Q8NG48 757 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 FAM89AQ96GI7 184 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 REPIN1Q9BWE0 567 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 CWC25Q9NXE8 425 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 PPP1R1BQ9UD71 204 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 DAXXQ9UER7 740 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 ZNF652Q9Y2D9 606 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 SLC27A5Q9Y2P5 690 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 LRRFIP2Q9Y608 721 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 NRXN2Q9P2S2 1712 aa8.19□□□□□ -1.1
DEPDC4-201ENST00000299185 KIAA1551Q9HCM1 1747 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 GRM8O00222 908 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 SERPINB2P05120 415 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 CCT4P50991 539 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 NEXNQ0ZGT2 675 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 INTS3Q68E01 1043 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 PRR5LQ6MZQ0 368 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 NBPF5PQ86XG9 351 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 ARHGAP45Q92619 1136 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 KAZALD1Q96I82 304 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 USP44Q9H0E7 712 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 PRDM9Q9NQV7 894 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 TRMT112Q9UI30 125 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 C10orf71Q711Q0 1435 aa8.18□□□□□ -1.1
DEPDC4-201ENST00000299185 SPEF2Q9C093 1822 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 ALDH1L1O75891 902 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 TM4SF1P30408 202 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 GRIPAP1Q4V328 841 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 HSP90AB3PQ58FF7 597 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 BRICD5Q6PL45 260 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 ANKRD44Q8N8A2 993 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 CNBD1Q8NA66 436 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 FLAD1Q8NFF5 587 aa8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 UTP14AQ9BVJ6 771 aaKnown RBP8.17□□□□□ -1.1
DEPDC4-201ENST00000299185 IRS4O14654 1257 aaPredicted RBP8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 NPHP1O15259 732 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 CHRNA5P30532 468 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 TRIM32Q13049 653 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 PDE3AQ14432 1141 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 HIC1Q14526 733 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 SULF1Q8IWU6 871 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 KLHDC4Q8TBB5 520 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 SH3TC1Q8TE82 1336 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 MRGPRX2Q96LB1 330 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 SETDB2Q96T68 719 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 MTFR1LQ9H019 292 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 BICC1Q9H694 974 aaKnown RBP8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 C9orf78Q9NZ63 289 aaPredicted RBP8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 IBTKQ9P2D0 1353 aaPredicted RBP8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 CHMP3Q9Y3E7 222 aa8.16□□□□□ -1.1
DEPDC4-201ENST00000299185 TAF1P21675 1872 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 LOC100996750A0A140TA64 210 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 H7C1W4 665 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 J3QL48 77 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 ZBTB7BO15156 539 aaPredicted RBP8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 PCCAP05165 728 aaPredicted RBP8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 UBTFL1P0CB47 393 aaPredicted RBP8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 GCGRP47871 477 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 PARP10Q53GL7 1025 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 CLEC4GQ6UXB4 293 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 NPAS3Q8IXF0 933 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 CCDC191Q8NCU4 936 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 CHMP4AQ9BY43 222 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 KRTAP4-6Q9BYQ5 205 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 PCDHB15Q9Y5E8 787 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 PARP3Q9Y6F1 533 aa8.15□□□□□ -1.1
DEPDC4-201ENST00000299185 CACNA1SQ13698 1873 aa8.15□□□□□ -1.11
DEPDC4-201ENST00000299185 UTYO14607 1347 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 CDHR2Q9BYE9 1310 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 PNMA6EA0A0J9YXQ4 647 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 DDX11L8A8MPP1 907 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 NEFLP07196 543 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 FECHP22830 423 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 CTSWP56202 376 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 FOXO4P98177 505 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 SKAP1Q86WV1 359 aa8.14□□□□□ -1.11
DEPDC4-201ENST00000299185 NLGN1Q8N2Q7 840 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms