RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 STX10O60499 249 aa9.81□□□□□ -0.84
NIPBL-201ENST00000282516 PPANQ9NQ55 473 aaKnown RBP9.81□□□□□ -0.84
NIPBL-201ENST00000282516 CABP1Q9NZU7 370 aa9.81□□□□□ -0.84
NIPBL-201ENST00000282516 CADPSQ9ULU8 1353 aa9.81□□□□□ -0.84
NIPBL-201ENST00000282516 ZNF131P52739 623 aa9.81□□□□□ -0.84
NIPBL-201ENST00000282516 VWA3BQ502W6 1294 aa9.81□□□□□ -0.84
NIPBL-201ENST00000282516 VAT1LQ9HCJ6 419 aa9.81□□□□□ -0.84
NIPBL-201ENST00000282516 AGTPBP1Q9UPW5 1226 aa9.81□□□□□ -0.84
NIPBL-201ENST00000282516 NOLC1Q14978 699 aaKnown RBP eCLIP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 RBM28Q9NW13 759 aaKnown RBP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 ESR2Q92731 530 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 KIAA1107Q9UPP5 1409 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 GABPAQ06546 454 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 LIN9Q5TKA1 542 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 ARHGEF2Q92974 986 aaKnown RBP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 TUBB2AQ13885 445 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 TUBB2BQ9BVA1 445 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 SPDYE3A6NKU9 549 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 WDR44Q5JSH3 913 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 IFIT1BQ5T764 474 aaKnown RBP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 SMARCC2Q8TAQ2 1214 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 CALM1P0DP23 149 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 CALM2P0DP24 149 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 CALM3P0DP25 149 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 ZSCAN22P10073 491 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 RPL13P26373 211 aaKnown RBP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 NAPAP54920 295 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 ZBTB43O43298 467 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 DNAJC8O75937 253 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 MIER3Q7Z3K6 550 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 CCDC125Q86Z20 511 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 PLCB1Q9NQ66 1216 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 C6orf229H3BNL8 230 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 AOPEPQ8N6M6 819 aa9.8□□□□□ -0.84
NIPBL-201ENST00000282516 ZNF526Q8TF50 670 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-201ENST00000282516 RHOXF2BP0C7M4 288 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 RHOXF2Q9BQY4 288 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 TLDC2A0PJX2 215 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 INPP5BP32019 993 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 TMPOP42166 694 aaKnown RBP9.79□□□□□ -0.84
NIPBL-201ENST00000282516 TERF1P54274 439 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 PIK3R4Q99570 1358 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 HS1BP3Q53T59 392 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 Q9H521 79 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 TAF7Q15545 349 aaPredicted RBP9.79□□□□□ -0.84
NIPBL-201ENST00000282516 MCM7P33993 719 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 ST5P78524 1137 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 PSMD6Q15008 389 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 PPFIA1Q13136 1202 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 TRIM14Q14142 442 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 RRS1Q15050 365 aaKnown RBP9.79□□□□□ -0.84
NIPBL-201ENST00000282516 ISM2Q6H9L7 571 aa9.79□□□□□ -0.84
NIPBL-201ENST00000282516 SPOPO43791 374 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 OGFRQ9NZT2 677 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 TRIM75PA6NK02 468 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 STX8Q9UNK0 236 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 INPP1P49441 399 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 BMP2KLQ5H9B9 411 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 PSPC1Q8WXF1 523 aaKnown RBP9.78□□□□□ -0.84
NIPBL-201ENST00000282516 NEK1Q96PY6 1258 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 TBC1D2Q9BYX2 928 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 UBE2Q2Q8WVN8 375 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 TFIP11Q9UBB9 837 aaKnown RBP9.78□□□□□ -0.84
NIPBL-201ENST00000282516 PPP2R3AQ06190 1150 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 ATP2A3Q93084 1043 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 NDUFAB1O14561 156 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 EPB41P11171 864 aaKnown RBP9.78□□□□□ -0.84
NIPBL-201ENST00000282516 RASSF2P50749 326 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 FLIIQ13045 1269 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 NBPF6Q5VWK0 638 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 NAA16Q6N069 864 aaPredicted RBP9.78□□□□□ -0.84
NIPBL-201ENST00000282516 IFT20Q8IY31 132 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 RNF10Q8N5U6 811 aaKnown RBP9.78□□□□□ -0.84
NIPBL-201ENST00000282516 NBPF4Q96M43 638 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 LGSNQ5TDP6 509 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 AFG3L2Q9Y4W6 797 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 RIOK3O14730 519 aaKnown RBP9.78□□□□□ -0.84
NIPBL-201ENST00000282516 PLCB4Q15147 1175 aa9.78□□□□□ -0.84
NIPBL-201ENST00000282516 LRPPRCP42704 1394 aaKnown RBP9.77□□□□□ -0.84
NIPBL-201ENST00000282516 NOX5Q96PH1 765 aa9.77□□□□□ -0.84
NIPBL-201ENST00000282516 CFAP70Q5T0N1 1121 aa9.77□□□□□ -0.84
NIPBL-201ENST00000282516 CCDC122Q5T0U0 273 aa9.77□□□□□ -0.84
NIPBL-201ENST00000282516 TBC1D9Q6ZT07 1266 aa9.77□□□□□ -0.84
NIPBL-201ENST00000282516 DBF4Q9UBU7 674 aaPredicted RBP9.77□□□□□ -0.84
NIPBL-201ENST00000282516 MTMR3Q13615 1198 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 NBPF8Q3BBV2 869 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 RUFY3Q7L099 469 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 LEO1Q8WVC0 666 aaPredicted RBP9.77□□□□□ -0.85
NIPBL-201ENST00000282516 SIRT1Q96EB6 747 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 RRP36Q96EU6 259 aaKnown RBP9.77□□□□□ -0.85
NIPBL-201ENST00000282516 ALG1Q9BT22 464 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 KRT3P12035 628 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 PLCG2P16885 1265 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 ATP6V1E1P36543 226 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 ZNF569Q5MCW4 686 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 XAB2Q9HCS7 855 aaKnown RBP9.77□□□□□ -0.85
NIPBL-201ENST00000282516 ANKFY1Q9P2R3 1169 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 GOLGA6CA6NDK9 693 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 GOLGA6DP0CG33 693 aa9.77□□□□□ -0.85
NIPBL-201ENST00000282516 HAND2P61296 217 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms