RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TOMM22Q9NS69 142 aa24.92■■□□□ 1.58
TRIM28-201ENST00000253024 JCADQ9P266 1359 aa24.92■■□□□ 1.58
TRIM28-201ENST00000253024 IMMTQ16891 758 aaKnown RBP24.91■■□□□ 1.58
TRIM28-201ENST00000253024 CCDC191Q8NCU4 936 aa24.91■■□□□ 1.58
TRIM28-201ENST00000253024 TMOD3Q9NYL9 352 aa24.91■■□□□ 1.58
TRIM28-201ENST00000253024 KIF28PB7ZC32 967 aa24.91■■□□□ 1.58
TRIM28-201ENST00000253024 TNNT1P13805 278 aa24.91■■□□□ 1.58
TRIM28-201ENST00000253024 SLC9C2Q5TAH2 1124 aa24.91■■□□□ 1.58
TRIM28-201ENST00000253024 IQSEC3Q9UPP2 1182 aaPredicted RBP24.91■■□□□ 1.58
TRIM28-201ENST00000253024 ALDH8A1Q9H2A2 487 aaPredicted RBP24.9■■□□□ 1.58
TRIM28-201ENST00000253024 SPATA31A3Q5VYP0 1347 aa24.9■■□□□ 1.58
TRIM28-201ENST00000253024 SPECC1Q5M775 1068 aa24.9■■□□□ 1.58
TRIM28-201ENST00000253024 HMGB1P09429 215 aaKnown RBP24.9■■□□□ 1.58
TRIM28-201ENST00000253024 CMTR1Q8N1G2 835 aaKnown RBP24.9■■□□□ 1.58
TRIM28-201ENST00000253024 MST1RQ04912 1400 aa24.89■■□□□ 1.58
TRIM28-201ENST00000253024 PCDH11XQ9BZA7 1347 aa24.89■■□□□ 1.58
TRIM28-201ENST00000253024 PCDH11YQ9BZA8 1340 aa24.89■■□□□ 1.58
TRIM28-201ENST00000253024 IL2RBP14784 551 aa24.89■■□□□ 1.58
TRIM28-201ENST00000253024 ATP2B1P20020 1258 aa24.89■■□□□ 1.58
TRIM28-201ENST00000253024 MCAMP43121 646 aa24.89■■□□□ 1.58
TRIM28-201ENST00000253024 DPCR1Q3MIW9 517 aa24.89■■□□□ 1.58
TRIM28-201ENST00000253024 RRP12Q5JTH9 1297 aaKnown RBP24.89■■□□□ 1.58
TRIM28-201ENST00000253024 ZNF213O14771 459 aa24.89■■□□□ 1.57
TRIM28-201ENST00000253024 CADPS2Q86UW7 1296 aa24.89■■□□□ 1.57
TRIM28-201ENST00000253024 PLA2G4DQ86XP0 818 aa24.89■■□□□ 1.57
TRIM28-201ENST00000253024 ZKSCAN3Q9BRR0 538 aa24.89■■□□□ 1.57
TRIM28-201ENST00000253024 RCOR1Q9UKL0 485 aa24.89■■□□□ 1.57
TRIM28-201ENST00000253024 ITGA6P23229 1130 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 ANTXR2P58335 489 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 HMGN5P82970 282 aaKnown RBP24.88■■□□□ 1.57
TRIM28-201ENST00000253024 IQCB1Q15051 598 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 ZRSR1Q15695 479 aaKnown RBP24.88■■□□□ 1.57
TRIM28-201ENST00000253024 ATP2B3Q16720 1220 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 BRINP3Q76B58 766 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 TDRD7Q8NHU6 1098 aaKnown RBP24.88■■□□□ 1.57
TRIM28-201ENST00000253024 SIPA1L3O60292 1781 aaPredicted RBP24.88■■□□□ 1.57
TRIM28-201ENST00000253024 B4E1Z4 1266 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 SMC2O95347 1197 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 PRIMPOLQ96LW4 560 aa24.88■■□□□ 1.57
TRIM28-201ENST00000253024 U2AF2P26368 475 aaKnown RBP eCLIP24.87■■□□□ 1.577e-13■■■□□ 18.7
TRIM28-201ENST00000253024 GNL2Q13823 731 aaKnown RBP24.87■■□□□ 1.57
TRIM28-201ENST00000253024 ZNF396Q96N95 335 aaPredicted RBP24.87■■□□□ 1.57
TRIM28-201ENST00000253024 TCIRG1Q13488 830 aa24.87■■□□□ 1.57
TRIM28-201ENST00000253024 CHMP4CQ96CF2 233 aa24.87■■□□□ 1.57
TRIM28-201ENST00000253024 GOLGB1Q14789 3259 aaKnown RBP24.87■■□□□ 1.57
TRIM28-201ENST00000253024 STX1AQ16623 288 aa24.87■■□□□ 1.57
TRIM28-201ENST00000253024 SCN11AQ9UI33 1791 aa24.86■■□□□ 1.57
TRIM28-201ENST00000253024 KIF6Q6ZMV9 814 aa24.86■■□□□ 1.57
TRIM28-201ENST00000253024 FAM160A1Q05DH4 1040 aa24.86■■□□□ 1.57
TRIM28-201ENST00000253024 NAA16Q6N069 864 aaPredicted RBP24.86■■□□□ 1.57
TRIM28-201ENST00000253024 PIGBQ92521 554 aa24.86■■□□□ 1.57
TRIM28-201ENST00000253024 PHKA1P46020 1223 aa24.85■■□□□ 1.57
TRIM28-201ENST00000253024 NFXL1Q6ZNB6 911 aa24.85■■□□□ 1.57
TRIM28-201ENST00000253024 TRMT112Q9UI30 125 aaKnown RBP24.85■■□□□ 1.57
TRIM28-201ENST00000253024 TBC1D10CQ8IV04 446 aa24.85■■□□□ 1.57
TRIM28-201ENST00000253024 HPS5Q9UPZ3 1129 aa24.85■■□□□ 1.57
TRIM28-201ENST00000253024 WDR17Q8IZU2 1322 aa24.85■■□□□ 1.57
TRIM28-201ENST00000253024 GOLGA8FQ08AF8 430 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 GOLGA8DPQ0D2H9 430 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 SYNE3Q6ZMZ3 975 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 DHX40Q8IX18 779 aaKnown RBP24.84■■□□□ 1.57
TRIM28-201ENST00000253024 MRPS27Q92552 414 aaKnown RBP24.84■■□□□ 1.57
TRIM28-201ENST00000253024 LLPHQ9BRT6 129 aaKnown RBP24.84■■□□□ 1.57
TRIM28-201ENST00000253024 TRPM3Q9HCF6 1732 aaPredicted RBP24.84■■□□□ 1.57
TRIM28-201ENST00000253024 PIH1D3Q9NQM4 214 aaKnown RBP24.84■■□□□ 1.57
TRIM28-201ENST00000253024 WWC3Q9ULE0 1092 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 SKILP12757 684 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 RBM43Q6ZSC3 357 aaKnown RBP24.84■■□□□ 1.57
TRIM28-201ENST00000253024 CYB5R4Q7L1T6 521 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 CLIC6Q96NY7 704 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 LMOD1P29536 600 aaPredicted RBP24.84■■□□□ 1.57
TRIM28-201ENST00000253024 CTDSPL2Q05D32 466 aa24.84■■□□□ 1.57
TRIM28-201ENST00000253024 CCDC69A6NI79 296 aa24.83■■□□□ 1.57
TRIM28-201ENST00000253024 TNS3Q68CZ2 1445 aa24.83■■□□□ 1.56
TRIM28-201ENST00000253024 ENGASEQ8NFI3 743 aa24.82■■□□□ 1.56
TRIM28-201ENST00000253024 NCOA7Q8NI08 942 aa24.82■■□□□ 1.56
TRIM28-201ENST00000253024 ARFGEF2Q9Y6D5 1785 aa24.82■■□□□ 1.56
TRIM28-201ENST00000253024 SPTLC2O15270 562 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 LRRC8AQ8IWT6 810 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 PDCL2Q8N4E4 241 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 ZBTB1Q9Y2K1 713 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 MRC1P22897 1456 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 TRDNQ13061 729 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 LINC00301Q8NCQ3 95 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 APPBP2Q92624 585 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 ZNF274Q96GC6 653 aaPredicted RBP24.81■■□□□ 1.56
TRIM28-201ENST00000253024 ZNF532Q9HCE3 1301 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 SALL1Q9NSC2 1324 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 CEP57L1Q8IYX8 460 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 NBPF3Q9H094 633 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 IFNKQ9P0W0 207 aa24.81■■□□□ 1.56
TRIM28-201ENST00000253024 SMIM22K7EJ46 135 aa24.8■■□□□ 1.56
TRIM28-201ENST00000253024 CDC27P30260 824 aa24.8■■□□□ 1.56
TRIM28-201ENST00000253024 MYSM1Q5VVJ2 828 aa24.8■■□□□ 1.56
TRIM28-201ENST00000253024 ISCA1Q9BUE6 129 aa24.8■■□□□ 1.56
TRIM28-201ENST00000253024 ZHX1Q9UKY1 873 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-201ENST00000253024 IRS4O14654 1257 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-201ENST00000253024 WDHD1O75717 1129 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-201ENST00000253024 MB21D2Q8IYB1 491 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-201ENST00000253024 ALG1Q9BT22 464 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms