RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 ADARB2Q9NS39 739 aaKnown RBP10.47□□□□□ -0.73
VPS4B-201ENST00000238497 JAG2Q9Y219 1238 aa10.47□□□□□ -0.73
VPS4B-201ENST00000238497 TIAM2Q8IVF5 1701 aa10.47□□□□□ -0.73
VPS4B-201ENST00000238497 ATP8B2P98198 1209 aa10.46□□□□□ -0.73
VPS4B-201ENST00000238497 CHRNDQ07001 517 aa10.46□□□□□ -0.73
VPS4B-201ENST00000238497 SUCLG2Q96I99 432 aa10.46□□□□□ -0.73
VPS4B-201ENST00000238497 CCDC8Q9H0W5 538 aaPredicted RBP10.46□□□□□ -0.73
VPS4B-201ENST00000238497 CHMP5Q9NZZ3 219 aa10.46□□□□□ -0.73
VPS4B-201ENST00000238497 TRAF5O00463 557 aa10.46□□□□□ -0.73
VPS4B-201ENST00000238497 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.46□□□□□ -0.73
VPS4B-201ENST00000238497 ZNF804BA4D1E1 1349 aa10.46□□□□□ -0.74
VPS4B-201ENST00000238497 CWC27Q6UX04 472 aaKnown RBP10.46□□□□□ -0.74
VPS4B-201ENST00000238497 TRPM4Q8TD43 1214 aa10.46□□□□□ -0.74
VPS4B-201ENST00000238497 ANKRD2Q9GZV1 360 aa10.46□□□□□ -0.74
VPS4B-201ENST00000238497 COL4A5P29400 1685 aa10.46□□□□□ -0.74
VPS4B-201ENST00000238497 IFIT2P09913 472 aaKnown RBP10.45□□□□□ -0.74
VPS4B-201ENST00000238497 GLIS2Q9BZE0 524 aaPredicted RBP10.45□□□□□ -0.74
VPS4B-201ENST00000238497 CASP7P55210 303 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 MXD3Q9BW11 206 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 BICC1Q9H694 974 aaKnown RBP10.45□□□□□ -0.74
VPS4B-201ENST00000238497 FOXO4P98177 505 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 USP50Q70EL3 339 aaPredicted RBP10.45□□□□□ -0.74
VPS4B-201ENST00000238497 TXNRD3Q86VQ6 643 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 VPS37DQ86XT2 251 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 KLRG1Q96E93 195 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 PLA2G12BQ9BX93 195 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 PODXL2Q9NZ53 605 aa10.45□□□□□ -0.74
VPS4B-201ENST00000238497 SNED1Q8TER0 1413 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 F8W031 263 aaPredicted RBP10.44□□□□□ -0.74
VPS4B-201ENST00000238497 REC8O95072 547 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 CSF1RP07333 972 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 KLRK1P26718 216 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 GTF2IP78347 998 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 CHAMP1Q96JM3 812 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 SCAF8Q9UPN6 1271 aaKnown RBP10.44□□□□□ -0.74
VPS4B-201ENST00000238497 USP17L3A6NCW0 530 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 USP17L4A6NCW7 530 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 TMEM88BA6NKF7 163 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 ERC2O15083 957 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 G3BP1Q13283 466 aaKnown RBP eCLIP10.44□□□□□ -0.74
VPS4B-201ENST00000238497 USP17L1Q7RTZ2 530 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 OGFOD1Q8N543 542 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 RHPN1Q8TCX5 695 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 LEMD3Q9Y2U8 911 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 NDUFB9Q9Y6M9 179 aa10.44□□□□□ -0.74
VPS4B-201ENST00000238497 METTL24Q5JXM2 366 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 DLK2Q6UY11 383 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 KIAA1211Q6ZU35 1233 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 USP48Q86UV5 1035 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 AACSQ86V21 672 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 CLASRPQ8N2M8 674 aaKnown RBP10.43□□□□□ -0.74
VPS4B-201ENST00000238497 PUS3Q9BZE2 481 aaKnown RBP10.43□□□□□ -0.74
VPS4B-201ENST00000238497 K7ELQ4 463 aaPredicted RBP10.43□□□□□ -0.74
VPS4B-201ENST00000238497 CELF2O95319 508 aaKnown RBP10.43□□□□□ -0.74
VPS4B-201ENST00000238497 TTLL5Q6EMB2 1281 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 PODNQ7Z5L7 613 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 KIAA0825Q8IV33 1275 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 IQSEC3Q9UPP2 1182 aaPredicted RBP10.43□□□□□ -0.74
VPS4B-201ENST00000238497 DICER1Q9UPY3 1922 aaKnown RBP10.43□□□□□ -0.74
VPS4B-201ENST00000238497 EGFRP00533 1210 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 KIF4BQ2VIQ3 1234 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 KRT26Q7Z3Y9 468 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 DCPSQ96C86 337 aaKnown RBP10.43□□□□□ -0.74
VPS4B-201ENST00000238497 BOLA2Q9H3K6 86 aa10.43□□□□□ -0.74
VPS4B-201ENST00000238497 ITGBL1O95965 494 aaPredicted RBP10.42□□□□□ -0.74
VPS4B-201ENST00000238497 MCM4P33991 863 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 CREBZFQ9NS37 354 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 ST18O60284 1047 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 USP17L8P0C7I0 530 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 HIRAP54198 1017 aaPredicted RBP10.42□□□□□ -0.74
VPS4B-201ENST00000238497 RSBN1LQ6PCB5 846 aaPredicted RBP10.42□□□□□ -0.74
VPS4B-201ENST00000238497 SULF1Q8IWU6 871 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 DNAJC5GQ8N7S2 189 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 NEUROD6Q96NK8 337 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 USP26Q9BXU7 913 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 COL4A1P02462 1669 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 LAMB2P55268 1798 aa10.42□□□□□ -0.74
VPS4B-201ENST00000238497 DDX60Q8IY21 1712 aaKnown RBP10.42□□□□□ -0.74
VPS4B-201ENST00000238497 RBM5P52756 815 aaKnown RBP eCLIP10.41□□□□□ -0.74
VPS4B-201ENST00000238497 CHAF1AQ13111 956 aaPredicted RBP10.41□□□□□ -0.74
VPS4B-201ENST00000238497 ZGPATQ8N5A5 531 aaKnown RBP10.41□□□□□ -0.74
VPS4B-201ENST00000238497 DPF2Q92785 391 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 DIAPH3Q9NSV4 1193 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 RTL9Q8NET4 1388 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 TRAK2O60296 914 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 MCCP23508 829 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 CDC37L1Q7L3B6 337 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 ZNF804AQ7Z570 1209 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 COA1Q9GZY4 146 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 GGA3Q9NZ52 723 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 CPA1P15085 419 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 RPS12P25398 132 aaKnown RBP10.41□□□□□ -0.74
VPS4B-201ENST00000238497 DEFB115Q30KQ5 88 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 MCTP1Q6DN14 999 aa10.41□□□□□ -0.74
VPS4B-201ENST00000238497 TNPO1Q92973 898 aaKnown RBP10.41□□□□□ -0.74
VPS4B-201ENST00000238497 VIL1P09327 827 aaKnown RBP10.4□□□□□ -0.74
VPS4B-201ENST00000238497 GYG1P46976 350 aa10.4□□□□□ -0.74
VPS4B-201ENST00000238497 RBM25P49756 843 aaKnown RBP10.4□□□□□ -0.74
VPS4B-201ENST00000238497 TTLL12Q14166 644 aaPredicted RBP10.4□□□□□ -0.74
VPS4B-201ENST00000238497 LRRC24Q50LG9 513 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms