RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 NDUFA7O95182 113 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 ALDOBP05062 364 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 DLX6P56179 175 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 RELBQ01201 579 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 ZNF146Q15072 292 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 MIDNQ504T8 468 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 SATL1Q86VE3 508 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 FAM58AQ8N1B3 248 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 PHYHIPQ92561 330 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 SNX22Q96L94 193 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 TCF7L1Q9HCS4 588 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 RBFOX1Q9NWB1 397 aaKnown RBP15.7■□□□□ 0.1
CLN3-260ENST00000637578 IGKV1-12A0A0C4DH73 117 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 TRDV1A0A1B0GX56 115 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 TMEM82A0PJX8 343 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 IGKV1D-12P01611 117 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 BCL3P20749 454 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 MDKP21741 143 aaPredicted RBP15.69■□□□□ 0.1
CLN3-260ENST00000637578 ZP1P60852 638 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 ZNF273Q14593 569 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 TAF9Q16594 264 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 SHISA2Q6UWI4 295 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 C17orf107Q6ZR85 190 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 OR8H2Q8N162 312 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 ASCC1Q8N9N2 400 aaKnown RBP15.69■□□□□ 0.1
CLN3-260ENST00000637578 SGMS2Q8NHU3 365 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 EMG1Q92979 244 aaKnown RBP15.69■□□□□ 0.1
CLN3-260ENST00000637578 CPNE2Q96FN4 548 aaPredicted RBP15.69■□□□□ 0.1
CLN3-260ENST00000637578 MRPS26Q9BYN8 205 aaKnown RBP15.69■□□□□ 0.1
CLN3-260ENST00000637578 IL36RNQ9UBH0 155 aa15.69■□□□□ 0.1
CLN3-260ENST00000637578 A0A1B0GUS0 222 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 A0A1W2PRD5 423 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 A0A1W2PRF3 423 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 A0A1W2PRM7 423 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 MEIOCA2RUB1 952 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 C17orf98A8MV24 154 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 ANGPTL7O43827 346 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 ARL6IP5O75915 188 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 KDM4BO94953 1096 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 HAND1O96004 215 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 CYB5AP00167 134 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 CCL3L1P16619 93 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 CD36P16671 472 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 SRMP19623 302 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 OMGP23515 440 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 CALRP27797 417 aaKnown RBP15.68■□□□□ 0.1
CLN3-260ENST00000637578 SPIN3Q5JUX0 258 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 LRRTM1Q86UE6 522 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 SAXO1Q8IYX7 474 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 GPER1Q99527 375 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 HEXA-AS1Q9H8Q6 139 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 HMG20AQ9NP66 347 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 STUB1Q9UNE7 303 aa15.68■□□□□ 0.1
CLN3-260ENST00000637578 hCG_1809904A0A1W2PP81 198 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 A0A1W2PPE2 198 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 A0A1W2PR64 198 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 A0A1W2PRV1 198 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 GPR137BO60478 399 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 CRYBA1P05813 215 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 GALP22466 123 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 ZNF93P35789 620 aaPredicted RBP15.67■□□□□ 0.1
CLN3-260ENST00000637578 BEND2Q8NDZ0 799 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 SLITRK2Q9H156 845 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 OR51E2Q9H255 320 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 RHOFQ9HBH0 211 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 EXOSC4Q9NPD3 245 aaKnown RBP15.67■□□□□ 0.1
CLN3-260ENST00000637578 NBEAL1Q6ZS30 2694 aa15.67■□□□□ 0.1
CLN3-260ENST00000637578 PSPNO60542 156 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 RBP4P02753 201 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 TMEM225BP0DP42 221 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 GADD45AP24522 165 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 OR3A4PP47883 348 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 RAG2P55895 527 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 ERVFRD-1P60508 538 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 MEF2CQ06413 473 aaPredicted RBP15.66■□□□□ 0.1
CLN3-260ENST00000637578 C22orf42Q6IC83 251 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 JAGN1Q8N5M9 183 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 NKAIN3Q8N8D7 197 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 OR4F5Q8NH21 305 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 TNFAIP8L1Q8WVP5 186 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 C17orf50Q8WW18 174 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 MEGF9Q9H1U4 602 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 LMO1P25800 156 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 GDPD3Q7L5L3 318 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 TCF23Q7RTU1 214 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 LYPD6Q86Y78 171 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 ZSCAN4Q8NAM6 433 aaPredicted RBP15.66■□□□□ 0.1
CLN3-260ENST00000637578 YIPF6Q96EC8 236 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 FAM192AQ9GZU8 254 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 BEX1Q9HBH7 125 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 VPREB3Q9UKI3 123 aa15.66■□□□□ 0.1
CLN3-260ENST00000637578 MEGF11A6BM72 1044 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 PAHP00439 452 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 ZNF728P0DKX0 622 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 PRKACAP17612 351 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 DUSP1P28562 367 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 FGF9P31371 208 aaPredicted RBP15.65■□□□□ 0.1
CLN3-260ENST00000637578 PTGFRP43088 359 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 GDPGP1Q6ZNW5 385 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 OR5R1Q8NH85 324 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms