RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF69Q9UC07 566 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 UBE2J1Q9Y385 318 aaPredicted RBP15.01□□□□□ -0.01
CLN3-259ENST00000637551 A0A0G2JK05 382 aa15□□□□□ -0.01
CLN3-259ENST00000637551 C17orf98A8MV24 154 aa15□□□□□ -0.01
CLN3-259ENST00000637551 PSPNO60542 156 aa15□□□□□ -0.01
CLN3-259ENST00000637551 GABRR1P24046 479 aa15□□□□□ -0.01
CLN3-259ENST00000637551 CFPP27918 469 aa15□□□□□ -0.01
CLN3-259ENST00000637551 P2RX3P56373 397 aa15□□□□□ -0.01
CLN3-259ENST00000637551 C1orf100Q5SVJ3 147 aa15□□□□□ -0.01
CLN3-259ENST00000637551 TMEM200BQ69YZ2 307 aa15□□□□□ -0.01
CLN3-259ENST00000637551 RNF144BQ7Z419 303 aa15□□□□□ -0.01
CLN3-259ENST00000637551 CEACAM19Q7Z692 300 aa15□□□□□ -0.01
CLN3-259ENST00000637551 FAM185AQ8N0U4 392 aa15□□□□□ -0.01
CLN3-259ENST00000637551 JAGN1Q8N5M9 183 aa15□□□□□ -0.01
CLN3-259ENST00000637551 TMEM86BQ8N661 226 aa15□□□□□ -0.01
CLN3-259ENST00000637551 CORO2AQ92828 525 aa15□□□□□ -0.01
CLN3-259ENST00000637551 CST11Q9H112 138 aa15□□□□□ -0.01
CLN3-259ENST00000637551 OCEL1Q9H607 264 aa15□□□□□ -0.01
CLN3-259ENST00000637551 HEXA-AS1Q9H8Q6 139 aa15□□□□□ -0.01
CLN3-259ENST00000637551 TAS2R3Q9NYW6 316 aa15□□□□□ -0.01
CLN3-259ENST00000637551 IL36RNQ9UBH0 155 aa15□□□□□ -0.01
CLN3-259ENST00000637551 MRPS28Q9Y2Q9 187 aaKnown RBP15□□□□□ -0.01
CLN3-259ENST00000637551 MAGEA13PA6NCF6 341 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 SLC33A1O00400 549 aaPredicted RBP14.99□□□□□ -0.01
CLN3-259ENST00000637551 CCRL2O00421 344 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 DEGS1O15121 323 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 WIPF1O43516 503 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 GLAP06280 429 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 ZNF728P0DKX0 622 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 ZNF44P15621 663 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 MAP2K4P45985 399 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 ERVFRD-1P60508 538 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 MIDNQ504T8 468 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 TMEM91Q6ZNR0 172 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 LRRTM1Q86UE6 522 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 C1orf147Q96MC9 270 aaPredicted RBP14.99□□□□□ -0.01
CLN3-259ENST00000637551 SLC6A7Q99884 636 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 ELL3Q9HB65 397 aaPredicted RBP14.99□□□□□ -0.01
CLN3-259ENST00000637551 ST3GAL6Q9Y274 331 aa14.99□□□□□ -0.01
CLN3-259ENST00000637551 TRAV1-2A0A0B4J238 106 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 TRDV1A0A1B0GX56 115 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 TRIM77I1YAP6 450 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 TNFAIP8O95379 198 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 TFF1P04155 84 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 MAS1P04201 325 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 GP2P55259 537 aaKnown RBP14.98□□□□□ -0.01
CLN3-259ENST00000637551 DLX6P56179 175 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 AWAT2Q6E213 333 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 BATF2Q8N1L9 274 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 C11orf42Q8N5U0 333 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 OR6M1Q8NGM8 313 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 ZNF714Q96N38 554 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 GAL3ST2Q9H3Q3 398 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 OR6C3Q9NZP0 311 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 POMT1Q9Y6A1 747 aa14.98□□□□□ -0.01
CLN3-259ENST00000637551 TRGV10A0A0A0MS01 117 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 SLC22A1O15245 554 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 CA11O75493 328 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 CDRT1O95170 752 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 HTR3BO95264 441 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 BPNT1O95861 308 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 FGF9P31371 208 aaPredicted RBP14.97□□□□□ -0.01
CLN3-259ENST00000637551 EDDM3BP56851 147 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 RPL15P61313 204 aaKnown RBP14.97□□□□□ -0.01
CLN3-259ENST00000637551 RPS25P62851 125 aaKnown RBP14.97□□□□□ -0.01
CLN3-259ENST00000637551 SSX1Q16384 188 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 LDLRAD3Q86YD5 345 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 OR4S1Q8NGB4 309 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 FAM216AQ8WUB2 273 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 LHX4Q969G2 390 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 MUL1Q969V5 352 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 ORAI1Q96D31 301 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 BARHL1Q9BZE3 327 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 LINC00574Q9H8X3 128 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 RCC2Q9P258 522 aaKnown RBP14.97□□□□□ -0.01
CLN3-259ENST00000637551 ING4Q9UNL4 249 aa14.97□□□□□ -0.01
CLN3-259ENST00000637551 A0A1W2PPK0 400 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 RNASEK-C17orf49H0YIS7 233 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 SIRPB1O00241 398 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 DUSP1P28562 367 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 ZNF273Q14593 569 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 AANATQ16613 207 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 SLC22A6Q4U2R8 563 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 PAN3Q58A45 887 aaKnown RBP14.96□□□□□ -0.01
CLN3-259ENST00000637551 SYT6Q5T7P8 510 aaPredicted RBP14.96□□□□□ -0.01
CLN3-259ENST00000637551 GLIPR1L1Q6UWM5 242 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 OR4D6Q8NGJ1 314 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 TMEM203Q969S6 136 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 FBLN5Q9UBX5 448 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 KIAA2026Q5HYC2 2103 aa14.96□□□□□ -0.01
CLN3-259ENST00000637551 TRAV24A0A0B4J272 114 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 ODAMA1E959 279 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 SLC17A2O00624 439 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 FBP1P09467 338 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 SERPINA2P20848 420 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 FABP5Q01469 135 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 RBM39Q14498 530 aaKnown RBP14.95□□□□□ -0.02
CLN3-259ENST00000637551 INSL4Q14641 139 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 FAM27D1Q5T7N8 215 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 OR52W1Q6IF63 320 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms