RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 NKX2-1P43699 371 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-214ENST00000637038 HTR5AP47898 357 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 RPL23AP62750 156 aaKnown RBP3.47□□□□□ -1.85
SCN1A-214ENST00000637038 MRPS34P82930 218 aaKnown RBP3.47□□□□□ -1.85
SCN1A-214ENST00000637038 BAXQ07812 192 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 FOXO1Q12778 655 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 TMEM268Q5VZI3 342 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 PLCXD3Q63HM9 321 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 SLC22A25Q6T423 547 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 DPPA3Q6W0C5 159 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 Q6ZS52 159 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 WDFY1Q8IWB7 410 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OSR2Q8N2R0 312 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OR4A4PQ8NGN8 299 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 MRGPRFQ96AM1 343 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 RRNAD1Q96FB5 475 aaKnown RBP3.47□□□□□ -1.85
SCN1A-214ENST00000637038 REEP6Q96HR9 211 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 JSRP1Q96MG2 331 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-214ENST00000637038 BBC3Q96PG8 261 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OR6C1Q96RD1 312 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 ANGPTL4Q9BY76 406 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 PLEKHF2Q9H8W4 249 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 RNF122Q9H9V4 155 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 GPR173Q9NS66 373 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 ABI3Q9P2A4 366 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 TIMM10BQ9Y5J6 103 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 B3GALT1Q9Y5Z6 326 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 LOC101059948A0A1B0GTJ6 334 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 MSGN1A6NI15 193 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 B4E171 279 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 MSTNO14793 375 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 NRASP01111 189 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OPN1MWP04001 364 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 P04436 131 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 CST2P09228 141 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 DANCRP0C864 163 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OPN1MW2P0DN77 364 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OPN1MW3P0DN78 364 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 TMEM50BP56557 158 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 CLDN15P56746 228 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 UBE2KP61086 200 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 AWAT1Q58HT5 328 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 DCAF12Q5T6F0 453 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 MCEMP1Q8IX19 187 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 WDSUB1Q8N9V3 476 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 AGBL5Q8NDL9 886 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 NFAM1Q8NET5 270 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OR10G3Q8NGC4 313 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OR2G3Q8NGZ4 309 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 OR1F12Q8NHA8 337 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 C2CD4CQ8TF44 421 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 Q96M66 194 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 FER1L6-AS2Q96M78 137 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 PFDN5Q99471 154 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 GINS3Q9BRX5 216 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 NIPSNAP3BQ9BS92 247 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 B3GAT1Q9P2W7 334 aa3.47□□□□□ -1.85
SCN1A-214ENST00000637038 COL6A6A6NMZ7 2263 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 A0A0A6YYD4 124 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 IGKV1D-43A0A0B4J1Z2 117 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF816-ZNF321PA0A0X1KG74 233 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1B0GW64 132 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 C7orf77A4D0Y5 90 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A10PA6NDY2 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A18PA6NE21 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A16PA6NEW6 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A20PA6NIJ5 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A8PA6NJQ4 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A7PA6NKC0 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A22PA8MWA6 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A12PA8MX19 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A5PA8MXJ8 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A23PA8MXZ1 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OR2C1O95371 312 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A15PP0C7V4 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A13PP0C7W8 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A14PP0C7W9 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A24PP0C7X0 464 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 RAB5AP20339 215 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FUT3P21217 361 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SNCAP37840 140 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 CRIP3Q6Q6R5 217 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 C6orf201Q7Z4U5 140 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 TGIF2LYQ8IUE0 185 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 ZFP82Q8N141 532 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 LRRC18Q8N456 261 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 LRTM2Q8N967 370 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 HSD17B11Q8NBQ5 300 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 APCDD1LQ8NCL9 501 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OR10S1Q8NGN2 331 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OR2I1PQ8NGU4 316 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SECTM1Q8WVN6 248 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM54Q969K7 222 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 MRPL24Q96A35 216 aaKnown RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SGCZQ96LD1 299 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OPA3Q9H6K4 179 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 WDR54Q9H977 334 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SIRT7Q9NRC8 400 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 COA4Q9NYJ1 87 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 METTL1Q9UBP6 276 aaKnown RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms