RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 GATA3P23771 443 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 MAPK3P27361 379 aaPredicted RBP11.05□□□□□ -0.64
LINC00540-202ENST00000616974 DLX6P56179 175 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 P2RY14Q15391 338 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 CD276Q5ZPR3 534 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 SIGIRRQ6IA17 410 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 Q8IYB0 196 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 SVOPQ8N4V2 548 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 Q8NFD4 153 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 OR51T1Q8NGJ9 327 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 SLC25A28Q96A46 364 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 MDFIQ99750 246 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 VENTXO95231 258 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 CHRM2P08172 466 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 VSIG8P0DPA2 414 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 HNF1AP20823 631 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 OMGP23515 440 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 GADD45AP24522 165 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 GDNFP39905 211 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 RBM11P57052 281 aaKnown RBP11.05□□□□□ -0.64
LINC00540-202ENST00000616974 SYT6Q5T7P8 510 aaPredicted RBP11.05□□□□□ -0.64
LINC00540-202ENST00000616974 PNLDC1Q8NA58 520 aaKnown RBP11.05□□□□□ -0.64
LINC00540-202ENST00000616974 TSPAN14Q8NG11 270 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 UBALD1Q8TB05 177 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 NANPQ8TBE9 248 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 A0A0A6YYD4 124 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 OR7C1O76099 320 aaPredicted RBP11.04□□□□□ -0.64
LINC00540-202ENST00000616974 LIPFP07098 398 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 CLEC2LP0C7M8 214 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 MTNR1BP49286 362 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 RIPPLY3P57055 190 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 SPIN3Q5JUX0 258 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 HES5Q5TA89 166 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 OSR2Q8N2R0 312 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 SNX22Q96L94 193 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 CENPOQ9BU64 300 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 METTL9Q9H1A3 318 aa11.04□□□□□ -0.64
LINC00540-202ENST00000616974 TXNL4BQ9NX01 149 aaKnown RBP11.04□□□□□ -0.64
LINC00540-202ENST00000616974 DEGS1O15121 323 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 CRTAPO75718 401 aaPredicted RBP11.03□□□□□ -0.64
LINC00540-202ENST00000616974 MGMTP16455 207 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 LMO1P25800 156 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 LDLRAD2Q5SZI1 272 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 CHCHD6Q9BRQ6 235 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 ZNRD1Q9P1U0 126 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 LPAR3Q9UBY5 353 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 SH2D1BO14796 132 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 MRPS14O60783 128 aaKnown RBP11.03□□□□□ -0.64
LINC00540-202ENST00000616974 TNFAIP8O95379 198 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 ECDO95905 644 aaPredicted RBP11.03□□□□□ -0.64
LINC00540-202ENST00000616974 SLC2A2P11168 524 aaPredicted RBP11.03□□□□□ -0.64
LINC00540-202ENST00000616974 QRFPP83859 136 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 C1orf100Q5SVJ3 147 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 GDPD3Q7L5L3 318 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 SUMF2Q8NBJ7 301 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 SELENOIQ9C0D9 397 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 ZNF696Q9H7X3 374 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 IL36GQ9NZH8 169 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 NUP50Q9UKX7 468 aa11.03□□□□□ -0.64
LINC00540-202ENST00000616974 LOC100506127A0A0U1RQW1 187 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 TRDV1A0A1B0GX56 115 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 SLC22A1O15245 554 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 IGHV3-7P01780 117 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 CD37P11049 281 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 JUNBP17275 347 aaPredicted RBP11.02□□□□□ -0.64
LINC00540-202ENST00000616974 CPT2P23786 658 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 LSM3P62310 102 aaKnown RBP11.02□□□□□ -0.64
LINC00540-202ENST00000616974 PAN3Q58A45 887 aaKnown RBP11.02□□□□□ -0.64
LINC00540-202ENST00000616974 Q6ZPA2 131 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 SIGLECL1Q8N7X8 197 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 OR51D1Q8NGF3 324 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 TBC1D15Q8TC07 691 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 AJUBAQ96IF1 538 aa11.02□□□□□ -0.64
LINC00540-202ENST00000616974 A0A0U1RQK1 487 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 MPIG6BO95866 241 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 CSTBP04080 98 aaKnown RBP11.02□□□□□ -0.65
LINC00540-202ENST00000616974 CD36P16671 472 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 HTR2CP28335 458 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 BMXP51813 675 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 EFNB2P52799 333 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 P2RX3P56373 397 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 MXD1Q05195 221 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 TUSC1Q2TAM9 212 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 DEFB112Q30KQ8 113 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 ATAD3CQ5T2N8 411 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 NKAIN3Q8N8D7 197 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 OR13A1Q8NGR1 328 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 PHYHIPQ92561 330 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 RBMXL1Q96E39 390 aaKnown RBP11.02□□□□□ -0.65
LINC00540-202ENST00000616974 Q96M66 194 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 NAA50Q9GZZ1 169 aaKnown RBP11.02□□□□□ -0.65
LINC00540-202ENST00000616974 FAM234AQ9H0X4 552 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 TNFRSF19Q9NS68 423 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 KIF25Q9UIL4 384 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 KPTNQ9Y664 436 aa11.02□□□□□ -0.65
LINC00540-202ENST00000616974 COX7A1P24310 79 aa11.01□□□□□ -0.65
LINC00540-202ENST00000616974 KRTAP24-1Q3LI83 254 aa11.01□□□□□ -0.65
LINC00540-202ENST00000616974 RSBN1Q5VWQ0 802 aaPredicted RBP11.01□□□□□ -0.65
LINC00540-202ENST00000616974 S100A13Q99584 98 aa11.01□□□□□ -0.65
LINC00540-202ENST00000616974 UQCC2Q9BRT2 126 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms