RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	DNAJC9-AS1	A6NH13	148 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	MGST3	O14880	152 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	COX7A1	P24310	79 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	P2RX3	P56373	397 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	AES	Q08117	197 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	BAMBI	Q13145	260 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	USP43	Q70EL4	1123 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	SPART	Q8N0X7	666 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	PIP4P2	Q8N4L2	257 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	SVOP	Q8N4V2	548 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	13.37	□□□□□ -0.27
RARA-209	ENST00000579727	NKAIN3	Q8N8D7	197 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	OR51T1	Q8NGJ9	327 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	OR5D13	Q8NGL4	314 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	PPP1R35	Q8TAP8	253 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	DMRTB1	Q96MA1	342 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	C1orf147	Q96MC9	270 aa	Predicted RBP	13.37	□□□□□ -0.27
RARA-209	ENST00000579727	METTL8	Q9H825	291 aa	Known RBP	13.37	□□□□□ -0.27
RARA-209	ENST00000579727	IL36G	Q9NZH8	169 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727	ST3GAL6	Q9Y274	331 aa		13.37	□□□□□ -0.27
RARA-209	ENST00000579727		A0A0A6YYJ9	748 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	TRAV24	A0A0B4J272	114 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727		A0A1W2PPH5	198 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	GEMIN2	O14893	280 aa	Known RBP	13.36	□□□□□ -0.27
RARA-209	ENST00000579727	UCHL1	P09936	223 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	PRTN3	P24158	256 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	LMO1	P25800	156 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	PSMB9	P28065	219 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	GLIPR1	P48060	266 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	BMX	P51813	675 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	DLX6	P56179	175 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	RBM11	P57052	281 aa	Known RBP	13.36	□□□□□ -0.27
RARA-209	ENST00000579727	IL13RA2	Q14627	380 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	TUSC1	Q2TAM9	212 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	PAN3	Q58A45	887 aa	Known RBP	13.36	□□□□□ -0.27
RARA-209	ENST00000579727	HCP5	Q6MZN7	132 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	TRAPPC6B	Q86SZ2	158 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	LYPD6	Q86Y78	171 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	C11orf42	Q8N5U0	333 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	ZDHHC16	Q969W1	377 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	COQ2	Q96H96	371 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	C19orf24	Q9BVV8	132 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	YTHDF1	Q9BYJ9	559 aa	Known RBP	13.36	□□□□□ -0.27
RARA-209	ENST00000579727	KCNK15	Q9H427	330 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	BANF2	Q9H503	90 aa		13.36	□□□□□ -0.27
RARA-209	ENST00000579727	hADV38S2	A0JD32	116 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	HAX1	O00165	279 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	NPFF	O15130	113 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	HOXA3	O43365	443 aa	Predicted RBP	13.35	□□□□□ -0.27
RARA-209	ENST00000579727	OR7C1	O76099	320 aa	Predicted RBP	13.35	□□□□□ -0.27
RARA-209	ENST00000579727	SRM	P19623	302 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	CALR	P27797	417 aa	Known RBP	13.35	□□□□□ -0.27
RARA-209	ENST00000579727	GABRA5	P31644	462 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	UBA52	P62987	128 aa	Known RBP	13.35	□□□□□ -0.27
RARA-209	ENST00000579727	KRBOX4	Q5JUW0	171 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	BRICD5	Q6PL45	260 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	C1orf122	Q6ZSJ8	110 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	CHST4	Q8NCG5	386 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727		Q8NFD4	153 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	TBC1D15	Q8TC07	691 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	FAM46B	Q96A09	425 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	CYYR1	Q96J86	154 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	ZNF714	Q96N38	554 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	JMJD8	Q96S16	334 aa		13.35	□□□□□ -0.27
RARA-209	ENST00000579727	C17orf98	A8MV24	154 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	TRIM77	I1YAP6	450 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	MRPS14	O60783	128 aa	Known RBP	13.34	□□□□□ -0.27
RARA-209	ENST00000579727	ZNF780A	O75290	641 aa	Predicted RBP	13.34	□□□□□ -0.27
RARA-209	ENST00000579727	CRTAP	O75718	401 aa	Predicted RBP	13.34	□□□□□ -0.27
RARA-209	ENST00000579727	ZNF728	P0DKX0	622 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	GTF2F2	P13984	249 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	PSMA1	P25786	263 aa	Known RBP	13.34	□□□□□ -0.27
RARA-209	ENST00000579727	SAA4	P35542	130 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	GUCA2A	Q02747	115 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	MEF2C	Q06413	473 aa	Predicted RBP	13.34	□□□□□ -0.27
RARA-209	ENST00000579727	TRAM1	Q15629	374 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	TAF9	Q16594	264 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	ATAD3C	Q5T2N8	411 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	UBE2U	Q5VVX9	321 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	NCR3LG1	Q68D85	454 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	ZNF773	Q6PK81	442 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	SUMF2	Q8NBJ7	301 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	TMEM104	Q8NE00	496 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	PLPPR1	Q8TBJ4	325 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	C17orf50	Q8WW18	174 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	PHYHIP	Q92561	330 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	GFI1	Q99684	422 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	SLITRK2	Q9H156	845 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	UNKL	Q9H9P5	680 aa	Known RBP	13.34	□□□□□ -0.27
RARA-209	ENST00000579727	NDUFB11	Q9NX14	153 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	AK6	Q9Y3D8	172 aa	Known RBP	13.34	□□□□□ -0.27
RARA-209	ENST00000579727	LRRC42	Q9Y546	428 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	LINC00312	Q9Y6C7	94 aa		13.34	□□□□□ -0.27
RARA-209	ENST00000579727	ODAM	A1E959	279 aa		13.33	□□□□□ -0.28
RARA-209	ENST00000579727	MEIOC	A2RUB1	952 aa		13.33	□□□□□ -0.28
RARA-209	ENST00000579727	MMP23A	O75900	390 aa		13.33	□□□□□ -0.28
RARA-209	ENST00000579727	PAX6	P26367	422 aa		13.33	□□□□□ -0.28
RARA-209	ENST00000579727	ERP29	P30040	261 aa	Known RBP	13.33	□□□□□ -0.28
RARA-209	ENST00000579727	UBE2E1	P51965	193 aa		13.33	□□□□□ -0.28
RARA-209	ENST00000579727	BPIFB3	P59826	476 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms