RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RAB11FIP2Q7L804 512 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 TUSC5Q8IXB3 177 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 HPSE2Q8WWQ2 592 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 SLAMF9Q96A28 289 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 ZPBPQ9BS86 351 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 BORCS7-ASMTA0A0B4J1R7 106 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 ZNF503-AS2A6NEH8 195 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 HLA-HP01893 362 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 CCNOP22674 350 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 KCNJ3P48549 501 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 NHLH2Q02577 135 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 TAAR9Q96RI9 348 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 MLXQ9UH92 298 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 RCL1Q9Y2P8 373 aaKnown RBP19.57■□□□□ 0.72
VPS53-211ENST00000571805 KLF2Q9Y5W3 355 aaPredicted RBP19.57■□□□□ 0.72
VPS53-211ENST00000571805 MUC3AQ02505 3323 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 NAPSAO96009 420 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 UCP2P55851 309 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 ZXDAP98168 799 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 LPAL2Q16609 132 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 SRSF7Q16629 238 aaKnown RBP eCLIP19.57■□□□□ 0.72
VPS53-211ENST00000571805 DBX2Q6ZNG2 339 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 SAXO1Q8IYX7 474 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 USB1Q9BQ65 265 aaKnown RBP19.57■□□□□ 0.72
VPS53-211ENST00000571805 SCRT1Q9BWW7 348 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 HES7Q9BYE0 225 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 SAV1Q9H4B6 383 aaPredicted RBP19.57■□□□□ 0.72
VPS53-211ENST00000571805 Q9N2K0 584 aa19.57■□□□□ 0.72
VPS53-211ENST00000571805 COLQQ9Y215 455 aaPredicted RBP19.57■□□□□ 0.72
VPS53-211ENST00000571805 C5orf49A4QMS7 147 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 HAAOP46952 286 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 GPM6AP51674 278 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 FGF12P61328 243 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 TCEAL6Q6IPX3 200 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 MEX3BQ6ZN04 569 aaKnown RBP19.56■□□□□ 0.72
VPS53-211ENST00000571805 TCEAL3Q969E4 200 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 TMEM222Q9H0R3 208 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 C11orf1Q9H5F2 150 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 CALHM2Q9HA72 323 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 SNCAP37840 140 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 CEACAM21Q3KPI0 293 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 FAM185AQ8N0U4 392 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 GUCD1Q96NT3 240 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 FAM86C1Q9NVL1 165 aa19.56■□□□□ 0.72
VPS53-211ENST00000571805 TNRC6AQ8NDV7 1962 aaKnown RBP19.55■□□□□ 0.72
VPS53-211ENST00000571805 WDFY4Q6ZS81 3184 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 C9orf172C9J069 976 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 MIDNQ504T8 468 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 CDCP2Q5VXM1 449 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 DPPA2Q7Z7J5 298 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 MTCH1Q9NZJ7 389 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 CACFD1Q9UGQ2 172 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 KMT2EQ8IZD2 1858 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 NKX2-6A6NCS4 301 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 TRDCB7Z8K6 153 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 SS18L1O75177 396 aaPredicted RBP19.55■□□□□ 0.72
VPS53-211ENST00000571805 TSPAN15O95858 294 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 COX5BP10606 129 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 LINC00518Q8N0U6 118 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 SECTM1Q8WVN6 248 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 AKR1E2Q96JD6 320 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 TMEM56Q96MV1 263 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 TMEM56-RWDD3S4R434 201 aa19.55■□□□□ 0.72
VPS53-211ENST00000571805 MEX3AA1L020 520 aaKnown RBP19.54■□□□□ 0.72
VPS53-211ENST00000571805 NME2P1O60361 137 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 CDS2O95674 445 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 SCTP09683 121 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 ZDHHC23Q8IYP9 409 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 DDA1Q9BW61 102 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 SH3BGRL3Q9H299 93 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 IL36RNQ9UBH0 155 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 PRSS44E7EML9 344 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 FHITP49789 147 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 SRPXP78539 464 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 MRPL21Q7Z2W9 205 aaKnown RBP19.54■□□□□ 0.72
VPS53-211ENST00000571805 TBC1D26Q86UD7 250 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 COMMD1Q8N668 190 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 APOBEC3DQ96AK3 386 aaPredicted RBP19.54■□□□□ 0.72
VPS53-211ENST00000571805 STRADBQ9C0K7 418 aa19.54■□□□□ 0.72
VPS53-211ENST00000571805 LMO1P25800 156 aa19.53■□□□□ 0.72
VPS53-211ENST00000571805 RND3P61587 244 aa19.53■□□□□ 0.72
VPS53-211ENST00000571805 HERPUD1Q15011 391 aa19.53■□□□□ 0.72
VPS53-211ENST00000571805 RXFP4Q8TDU9 374 aa19.53■□□□□ 0.72
VPS53-211ENST00000571805 BOD1Q96IK1 185 aa19.53■□□□□ 0.72
VPS53-211ENST00000571805 LUZP4Q9P127 313 aa19.53■□□□□ 0.72
VPS53-211ENST00000571805 ZNF732B4DXR9 585 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 NGFP01138 241 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 MAGEA5P43359 124 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 ZNF818PQ6ZRF7 136 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 FOXJ2Q9P0K8 574 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 B4GALT7Q9UBV7 327 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 ZNF175Q9Y473 711 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 FAM166BA8MTA8 275 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 TK1P04183 234 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 EWSR1Q01844 656 aaKnown RBP eCLIP19.52■□□□□ 0.72
VPS53-211ENST00000571805 ZNF616Q08AN1 781 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 GNMTQ14749 295 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 PEA15Q15121 130 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 ABHD17BQ5VST6 288 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 SELENOHQ8IZQ5 122 aaKnown RBP19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms