RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 DMWDQ09019 674 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 ZNF260Q3ZCT1 412 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 TMEM211Q6ICI0 200 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 SCN10AQ9Y5Y9 1956 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 TRAV20A0A0B4J274 112 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 CDRT15L2A8MXV6 281 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 ZNF660Q6AZW8 331 aaPredicted RBP13.47□□□□□ -0.25
CIITA-204ENST00000570546 CTHRC1Q96CG8 243 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 SLC25A22Q9H936 323 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 LCTP09848 1927 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 PNPP00491 289 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 CFDP00746 253 aaPredicted RBP13.47□□□□□ -0.25
CIITA-204ENST00000570546 ADH4P08319 380 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 DAOP14920 347 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 SPINK9Q5DT21 86 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 PLAC9Q5JTB6 97 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 SMRP1Q8NCR6 262 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 RGP1Q92546 391 aaPredicted RBP13.47□□□□□ -0.25
CIITA-204ENST00000570546 GPR35Q9HC97 309 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 CLCF1Q9UBD9 225 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 SHISA3A0PJX4 238 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 KLF4O43474 513 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 SPINK2P20155 84 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 ERVFC1-1P60608 527 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 PATJQ8NI35 1801 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 MFSD2BA6NFX1 497 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 MFNGO00587 321 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 CHEK1O14757 476 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 CCL4P13236 92 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 OR3A1P47881 315 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 VAX1Q5SQQ9 334 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 OR10G4Q8NGN3 311 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 OR10G9Q8NGN4 311 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 OR10G7Q8NGN6 311 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 TMEM37Q8WXS4 190 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 CCL28Q9NRJ3 127 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 IGKV1D-42A0A075B6H8 117 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 IGHV3-43A0A0B4J1X8 118 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 NKX2-6A6NCS4 301 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 AP4M1O00189 453 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 IGHV3-43DP0DP04 118 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 SSTP61278 116 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 TRAT1Q6PIZ9 186 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 SLC16A13Q7RTY0 426 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 TUSC5Q8IXB3 177 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 ZNF501Q96CX3 271 aaPredicted RBP13.46□□□□□ -0.25
CIITA-204ENST00000570546 CTDSP1Q9GZU7 261 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 MEX3AA1L020 520 aaKnown RBP13.46□□□□□ -0.25
CIITA-204ENST00000570546 VDAC1P21796 283 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 TPPP2P59282 170 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 ZNF385AQ96PM9 386 aaKnown RBP13.46□□□□□ -0.25
CIITA-204ENST00000570546 TMEM147Q9BVK8 224 aa13.46□□□□□ -0.25
CIITA-204ENST00000570546 C7orf77A4D0Y5 90 aa13.46□□□□□ -0.26
CIITA-204ENST00000570546 SYNGR2O43760 224 aa13.46□□□□□ -0.26
CIITA-204ENST00000570546 LMX1BO60663 402 aa13.46□□□□□ -0.26
CIITA-204ENST00000570546 ISG15P05161 165 aa13.46□□□□□ -0.26
CIITA-204ENST00000570546 HEXAP06865 529 aa13.46□□□□□ -0.26
CIITA-204ENST00000570546 RCC1P18754 421 aaPredicted RBP13.46□□□□□ -0.26
CIITA-204ENST00000570546 NUFIP2Q7Z417 695 aaKnown RBP13.46□□□□□ -0.26
CIITA-204ENST00000570546 OR13G1Q8NGZ3 307 aa13.46□□□□□ -0.26
CIITA-204ENST00000570546 TCFL5Q9UL49 500 aa13.46□□□□□ -0.26
CIITA-204ENST00000570546 MT-CO3P00414 261 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 CTSBP07858 339 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 CHRNB4P30926 498 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 FOXO1Q12778 655 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 ATP6V1FQ16864 119 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 MRGPRDQ8TDS7 321 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 PDCD11Q14690 1871 aaKnown RBP13.45□□□□□ -0.26
CIITA-204ENST00000570546 LYZL6O75951 148 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 MPGP29372 298 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 SCARF2Q96GP6 870 aaPredicted RBP13.45□□□□□ -0.26
CIITA-204ENST00000570546 ACY3Q96HD9 319 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 KNL1Q8NG31 2342 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 LY86O95711 162 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 NAAAQ02083 359 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 EIF3IQ13347 325 aaKnown RBP13.45□□□□□ -0.26
CIITA-204ENST00000570546 PRR27Q6MZM9 219 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 KCNK17Q96T54 332 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 RAB33BQ9H082 229 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 SPP1P10451 314 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 CDC34P49427 236 aaPredicted RBP13.45□□□□□ -0.26
CIITA-204ENST00000570546 CNN1P51911 297 aaKnown RBP13.45□□□□□ -0.26
CIITA-204ENST00000570546 AQP3Q92482 292 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 LPAR5Q9H1C0 372 aa13.45□□□□□ -0.26
CIITA-204ENST00000570546 A0A1B0GTQ1 180 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 C1orf100Q5SVJ3 147 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 LINC01590Q5TEZ4 76 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 UBAC2Q8NBM4 344 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 LRRC29Q8WV35 223 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 ADIPOR1Q96A54 375 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 OR5AC2Q9NZP5 309 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 XKRY2A2RUG3 117 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 RPL36A-HNRNPH2H7BZ11 118 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 MPLP40238 635 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 CSN1S1P47710 185 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 BTNL3Q6UXE8 466 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 ABHD3Q8WU67 409 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 APOBEC4Q8WW27 367 aaKnown RBP13.44□□□□□ -0.26
CIITA-204ENST00000570546 SLC26A1Q9H2B4 701 aa13.44□□□□□ -0.26
CIITA-204ENST00000570546 NYNRINQ9P2P1 1898 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms