RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 BMXP51813 675 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 CAPZA1P52907 286 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 DLX6P56179 175 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 PAX5Q02548 391 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 IKZF1Q13422 519 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 PLAC9Q5JTB6 97 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 BRICD5Q6PL45 260 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 C1orf229Q6ZS94 237 aaPredicted RBP7.67□□□□□ -1.18
VPS35-211ENST00000569950 USP43Q70EL4 1123 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 ZNF561Q8N587 486 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 KCNG3Q8TAE7 436 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 C8orf46Q8TAG6 207 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 DYRK2Q92630 601 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 PTX4Q96A99 478 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 DCTN5Q9BTE1 182 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 SSBP3Q9BWW4 388 aaPredicted RBP7.67□□□□□ -1.18
VPS35-211ENST00000569950 TMEM59Q9BXS4 323 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 SELENOIQ9C0D9 397 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 SLIRPQ9GZT3 109 aaKnown RBP7.67□□□□□ -1.18
VPS35-211ENST00000569950 GSX1Q9H4S2 264 aaPredicted RBP7.67□□□□□ -1.18
VPS35-211ENST00000569950 CUBNO60494 3623 aa7.67□□□□□ -1.18
VPS35-211ENST00000569950 PPIAL4CA0A0B4J2A2 164 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 LY6G6DO95868 133 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 CSN2P05814 226 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 MSMBP08118 114 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 INHBBP09529 407 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 CGB3P0DN86 165 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 CGB7P0DN87 165 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 FOSL1P15407 271 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 ZNF16P17020 682 aaPredicted RBP7.66□□□□□ -1.18
VPS35-211ENST00000569950 RAB6AP20340 208 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 SCAND1P57086 179 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 LCN2P80188 198 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 GPR176Q14439 515 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 KCNJ8Q15842 424 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 MPV17LQ2QL34 196 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 IDNKQ5T6J7 187 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 RSBN1Q5VWQ0 802 aaPredicted RBP7.66□□□□□ -1.18
VPS35-211ENST00000569950 OLFML2AQ68BL7 652 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 SLC36A1Q7Z2H8 476 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 LINC00596Q86U02 117 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 OR8H2Q8N162 312 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 TPRX1Q8N7U7 411 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 SUMF2Q8NBJ7 301 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 OR8B3Q8NGG8 313 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 RAB39BQ96DA2 213 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 POM121Q96HA1 1249 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 MED30Q96HR3 178 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 SNX22Q96L94 193 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 OR8B2Q96RD0 313 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 SULT4A1Q9BR01 284 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 CHST6Q9GZX3 395 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 NXF2Q9GZY0 626 aaKnown RBP7.66□□□□□ -1.18
VPS35-211ENST00000569950 FAM234AQ9H0X4 552 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 CST11Q9H112 138 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 PPA2Q9H2U2 334 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 MIXL1Q9H2W2 232 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 LPAR2Q9HBW0 351 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 C19orf12Q9NSK7 152 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 SLC25A10Q9UBX3 287 aaPredicted RBP7.66□□□□□ -1.18
VPS35-211ENST00000569950 CLN8Q9UBY8 286 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 OPN4Q9UHM6 478 aa7.66□□□□□ -1.18
VPS35-211ENST00000569950 RPUSD1Q9UJJ7 312 aaKnown RBP7.66□□□□□ -1.18
VPS35-211ENST00000569950 IGHV2-70DA0A0C4DH43 119 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 KIR2DS1A0A191URI9 304 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 SMIM31A0A1B0GVY4 71 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 NKX6-3A6NJ46 265 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 SH2D1BO14796 132 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 DEGS1O15121 323 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 CD5LO43866 347 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 FSHBP01225 129 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 CSTBP04080 98 aaKnown RBP7.65□□□□□ -1.18
VPS35-211ENST00000569950 CD99P14209 185 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 MMP9P14780 707 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 ZNF182P17025 639 aaPredicted RBP7.65□□□□□ -1.18
VPS35-211ENST00000569950 GLIPR1P48060 266 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 NPY4RP50391 375 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 PAX8Q06710 450 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 ZNF273Q14593 569 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 ESCO2Q56NI9 601 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 UTF1Q5T230 341 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 BTN2A1Q7KYR7 527 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 C6orf201Q7Z4U5 140 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 C5orf24Q7Z6I8 188 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 BPIFB2Q8N4F0 458 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 Q8N7P7 452 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 ASCC1Q8N9N2 400 aaKnown RBP7.65□□□□□ -1.18
VPS35-211ENST00000569950 LINC01356Q8N9X3 169 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 CHST4Q8NCG5 386 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 TMEM185AQ8NFB2 350 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 ST8SIA4Q92187 359 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 DPCDQ9BVM2 203 aaPredicted RBP7.65□□□□□ -1.18
VPS35-211ENST00000569950 TMPRSS13Q9BYE2 586 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 SIRPDQ9H106 197 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 RSL24D1Q9UHA3 163 aaKnown RBP7.65□□□□□ -1.18
VPS35-211ENST00000569950 ELF5Q9UKW6 265 aaPredicted RBP7.65□□□□□ -1.18
VPS35-211ENST00000569950 RAB22AQ9UL26 194 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 SPATA2Q9UM82 520 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 PCDHB10Q9UN67 800 aa7.65□□□□□ -1.18
VPS35-211ENST00000569950 INSIG2Q9Y5U4 225 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms