RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 AESQ08117 197 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 DDI2Q5TDH0 399 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 BEND2Q8NDZ0 799 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 PPP1R35Q8TAP8 253 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 DYRK2Q92630 601 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 MYDGFQ969H8 173 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 CPNE2Q96FN4 548 aaPredicted RBP12.22□□□□□ -0.45
VPS39-210ENST00000568357 ZNF714Q96N38 554 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 OR14A2Q96R54 314 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 OR5M11Q96RB7 305 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 CDCA4Q9BXL8 241 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 FAM192AQ9GZU8 254 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 PPA2Q9H2U2 334 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 SCN3BQ9NY72 215 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 C1RLQ9NZP8 487 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 ING4Q9UNL4 249 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 PCDHGB5Q9Y5G0 923 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 LINC00312Q9Y6C7 94 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 PRKDCP78527 4128 aaKnown RBP12.22□□□□□ -0.45
VPS39-210ENST00000568357 HTR3BO95264 441 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 RBP4P02753 201 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 CRYBA1P05813 215 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 MDKP21741 143 aaPredicted RBP12.21□□□□□ -0.45
VPS39-210ENST00000568357 SLC35A2P78381 396 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 DEFA6Q01524 100 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 RIPK1Q13546 671 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 RSU1Q15404 277 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 CHST4Q8NCG5 386 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 OR51T1Q8NGJ9 327 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 COQ2Q96H96 371 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 DERL3Q96Q80 235 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 ZNF747Q9BV97 191 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 ANKRD60Q9BZ19 345 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 MEGF9Q9H1U4 602 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 DUSP21Q9H596 190 aa12.21□□□□□ -0.45
VPS39-210ENST00000568357 TRAV24A0A0B4J272 114 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 FAM90A8PA6NJQ4 464 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 H0YHG0 523 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 MMP23AO75900 390 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 INSL4Q14641 139 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 IRF3Q14653 427 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 PIGYQ3MUY2 71 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 LDLRAD2Q5SZI1 272 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 IZUMO2Q6UXV1 221 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 LHFPL4Q7Z7J7 247 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 DYNAPQ8N1N2 210 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 OR11H6Q8NGC7 330 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 ZNF184Q99676 751 aaPredicted RBP12.2□□□□□ -0.46
VPS39-210ENST00000568357 SSX3Q99909 188 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 MND1Q9BWT6 205 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 ING3Q9NXR8 418 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 ZNF581Q9P0T4 197 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 CKLFQ9UBR5 152 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 VPREB3Q9UKI3 123 aa12.2□□□□□ -0.46
VPS39-210ENST00000568357 LSM2Q9Y333 95 aaKnown RBP12.2□□□□□ -0.46
VPS39-210ENST00000568357 PKD1L1Q8TDX9 2849 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 ODF3BA8MYP8 253 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 ARG1P05089 322 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 CSN2P05814 226 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 FSTP19883 344 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 RAG2P55895 527 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 LGALS4P56470 323 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 BDH1Q02338 343 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 SPHARQ15513 63 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 KRBOX4Q5JUW0 171 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 TRAPPC6BQ86SZ2 158 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 OR13D1Q8NGV5 346 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 CORO2AQ92828 525 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 METTL9Q9H1A3 318 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 PPIL3Q9H2H8 161 aaKnown RBP12.19□□□□□ -0.46
VPS39-210ENST00000568357 VCX3BQ9H321 246 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 IL36GQ9NZH8 169 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 FOXJ3Q9UPW0 622 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 UBE2J1Q9Y385 318 aaPredicted RBP12.19□□□□□ -0.46
VPS39-210ENST00000568357 TPRKBQ9Y3C4 175 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 SESN1Q9Y6P5 492 aa12.19□□□□□ -0.46
VPS39-210ENST00000568357 TRGV10A0A0A0MS01 117 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 A0A1W2PP11 408 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 ODAMA1E959 279 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 FUOMA2VDF0 154 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 POM121CA8CG34 1229 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 HSPB6O14558 160 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 NDUFA7O95182 113 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 ATP6V1G2O95670 118 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 MAS1P04201 325 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 CRHBPP24387 322 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 GP2P55259 537 aaKnown RBP12.18□□□□□ -0.46
VPS39-210ENST00000568357 RPL15P61313 204 aaKnown RBP12.18□□□□□ -0.46
VPS39-210ENST00000568357 IL13RA2Q14627 380 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 ATXN7L3Q14CW9 347 aaPredicted RBP12.18□□□□□ -0.46
VPS39-210ENST00000568357 ZNF626Q68DY1 528 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 UNQ9370/PRO34162Q6UXP9 181 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 BAIAP2L2Q6UXY1 529 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 LYPD6Q86Y78 171 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 OR5R1Q8NH85 324 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 PIFOQ8TCI5 191 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 ST3GAL6Q9Y274 331 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 MMP24Q9Y5R2 645 aa12.18□□□□□ -0.46
VPS39-210ENST00000568357 BTBD17A6NE02 478 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 H3BUX3 64 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms