RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZNF474Q6S9Z5 364 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 TMEM91Q6ZNR0 172 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 OR5D13Q8NGL4 314 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 GIMAP1Q8WWP7 306 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 ZNF524Q96C55 264 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 MRPL13Q9BYD1 178 aaKnown RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 WIPI2Q9Y4P8 454 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 HILPDAQ9Y5L2 63 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 SC5DO75845 299 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 TGFAP01135 160 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 TCRBP04435 133 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 ZBTB25P24278 435 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 ROM1Q03395 351 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 ACSM1Q08AH1 577 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 IAH1Q2TAA2 248 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 CEACAM21Q3KPI0 293 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 DCUN1D4Q92564 292 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 DPCDQ9BVM2 203 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 MS4A7Q9GZW8 240 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 RABL2AQ9UBK7 228 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 RABL2BQ9UNT1 228 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 COL6A3P12111 3177 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 IGHV3-72A0A0B4J1Y9 119 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 OR2F2O95006 317 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 VSIG8P0DPA2 414 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 NPBWR2P48146 333 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 B3GALT5-AS1P59052 145 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 COL10A1Q03692 680 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 C4orf17Q53FE4 359 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 SSX8Q7RTT4 187 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 LRP11Q86VZ4 500 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 SSC4DQ8WTU2 575 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 COMMD5Q9GZQ3 224 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 PRDM14Q9GZV8 571 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 OR6C3Q9NZP0 311 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 MGAT4AQ9UM21 535 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 PLXNA2O75051 1894 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 LRP5LA4QPB2 252 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 XRCC3O43542 346 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 FCGR3BO75015 233 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 APELAP0DMC3 54 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 UBE2V2Q15819 145 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 IGFL3Q6UXB1 125 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 LILRB4Q8NHJ6 448 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 RTN4IP1Q8WWV3 396 aaPredicted RBP7.94□□□□□ -1.14
VPS39-205ENST00000562258 NEUROG1Q92886 237 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 GAL3ST2Q9H3Q3 398 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 GNB4Q9HAV0 340 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 A0A0U1RQV5 110 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 ANKRD34BA5PLL1 514 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 IGHG3P01860 377 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 GABRB1P18505 474 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 PCMT1P22061 227 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 EFNB2P52799 333 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 SLC25A30Q5SVS4 291 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 SP5Q6BEB4 398 aaPredicted RBP7.94□□□□□ -1.14
VPS39-205ENST00000562258 ST6GALNAC2Q9UJ37 374 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 NUBP2Q9Y5Y2 271 aa7.94□□□□□ -1.14
VPS39-205ENST00000562258 H0YL77 283 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 LYPD3O95274 346 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 DLX5P56178 289 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 PIGPP57054 158 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 EIF5AP63241 154 aaKnown RBP7.93□□□□□ -1.14
VPS39-205ENST00000562258 GPR157Q5UAW9 335 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 OR8G2PQ6IF36 304 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 LRRC75AQ8NAA5 344 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 MRPL37Q9BZE1 423 aaKnown RBP7.93□□□□□ -1.14
VPS39-205ENST00000562258 BARX1Q9HBU1 254 aaPredicted RBP7.93□□□□□ -1.14
VPS39-205ENST00000562258 TUBD1Q9UJT1 453 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 A0A087WV48 116 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 MEIOCA2RUB1 952 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 CTAG2O75638 210 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 IL18BPO95998 194 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 ACKR3P25106 362 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 MRPL41Q8IXM3 137 aaKnown RBP7.93□□□□□ -1.14
VPS39-205ENST00000562258 OR8H3Q8N146 312 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 OR14K1Q8NGZ2 314 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 NMNAT2Q9BZQ4 307 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 SH2D2AQ9NP31 389 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 DLL4Q9NR61 685 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 PLSCR4Q9NRQ2 329 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 FAM206AQ9NX38 181 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 ZDHHC8Q9ULC8 765 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 PRRC2AP48634 2157 aaKnown RBP7.93□□□□□ -1.14
VPS39-205ENST00000562258 RHBDL1O75783 438 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 MMP15P51511 669 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 LCN2P80188 198 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 ZNF616Q08AN1 781 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 ZNF154Q13106 437 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 RTL8BQ17RB0 113 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 TMEM268Q5VZI3 342 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 STX12Q86Y82 276 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 MAGT1Q9H0U3 335 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 CRIM1Q9NZV1 1036 aa7.93□□□□□ -1.14
VPS39-205ENST00000562258 BORCS7-ASMTA0A0B4J1R7 106 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 TRIM64BA6NI03 449 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 NPIPB13A6NJU9 1138 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 NPIPB4C9JG80 1138 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 H3BP45 60 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 GPR37O15354 613 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms