RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SH2D1B	O14796	132 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	NDUFS6	O75380	124 aa	Known RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	MELTF	P08582	738 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	GPR3	P46089	330 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	CCL7	P80098	99 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	INSM1	Q01101	510 aa	Predicted RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	NAAA	Q02083	359 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	VAMP3	Q15836	100 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	LINC01590	Q5TEZ4	76 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	PRR27	Q6MZM9	219 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	SELENOH	Q8IZQ5	122 aa	Known RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF519	Q8TB69	540 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	NAT6	Q93015	286 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	ANAPC16	Q96DE5	110 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	DMRTA2	Q96SC8	542 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF586	Q9NXT0	402 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	PRSS50	Q9UI38	385 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	NAGK	Q9UJ70	344 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	PILRA	Q9UKJ1	303 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	FCGR3A	P08637	254 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	GPR12	P47775	334 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	EIF3I	Q13347	325 aa	Known RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR8B8	Q15620	311 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	LYSMD4	Q5XG99	296 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPRED2	Q7Z698	418 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR1P1	Q8NH06	330 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	LPAR5	Q9H1C0	372 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR2D2	Q9H210	308 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	HEYL	Q9NQ87	328 aa	Predicted RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF331	Q9NQX6	463 aa	Predicted RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	FKBP11	Q9NYL4	201 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	ERRFI1	Q9UJM3	462 aa	Predicted RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	GPR132	Q9UNW8	380 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	NPIPB9	F8W1W9	429 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	RAMP1	O60894	148 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	CTXN2	P0C2S0	81 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	TRGC1	P0CF51	173 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	HOXB1	P14653	301 aa	Predicted RBP	4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	GABRG2	P18507	467 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	GALNS	P34059	522 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	G6PC	P35575	357 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	GABRA4	P48169	554 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	UNC119	Q13432	240 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	SHH	Q15465	462 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	PRAMEF5	Q5TYX0	476 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	PRAMEF6	Q5VXH4	476 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005		Q6ZS52	159 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	ABHD5	Q8WTS1	349 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	RNF133	Q8WVZ7	376 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	PLPPR2	Q96GM1	343 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM9B	Q9NQ34	198 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	SLC2A9	Q9NRM0	540 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	SLC2A8	Q9NY64	477 aa		4.37	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGLV1-36	A0A0B4J1U3	117 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	MST1	P26927	711 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CCKAR	P32238	428 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	MPL	P40238	635 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	THBS3	P49746	956 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CASP6	P55212	293 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CLDN15	P56746	228 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	EGR4	Q05215	589 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM240	Q5SV17	173 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF600	Q6ZNG1	722 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SLC22A18AS	Q8N1D0	253 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	DDA1	Q9BW61	102 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	WFDC1	Q9HC57	220 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	COL4A6	Q14031	1691 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPTY2D1-AS1	A0A0U1RR47	76 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005		A0A1W2PQD3	144 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CXCL13	O43927	109 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	ADAM11	O75078	769 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	DANCR	P0C864	163 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	ADCYAP1	P18509	176 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CD27	P26842	260 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CDX1	P47902	265 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	ENDOG	Q14249	297 aa	Known RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM187	Q14656	261 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	DPPA3	Q6W0C5	159 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF574	Q6ZN55	896 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005		Q6ZN92	141 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	LINC00696	Q6ZRV3	163 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	REC114	Q7Z4M0	266 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	LRRC75A	Q8NAA5	344 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PCGF1	Q9BSM1	259 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	DEFB127	Q9H1M4	99 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	FSCN3	Q9NQT6	498 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CBLN4	Q9NTU7	201 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	BOK	Q9UMX3	212 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	YBX2	Q9Y2T7	364 aa	Known RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005		R4GN57	208 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	C11orf94	C9JXX5	98 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	FCN1	O00602	326 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	UBE2C	O00762	179 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	DHH	O43323	396 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	FOXS1	O43638	330 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CYB5R3	P00387	301 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	OPN1MW	P04001	364 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SEC11B	P0C7V7	166 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	OPN1MW2	P0DN77	364 aa		4.36	□□□□□ -1.71

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