RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 COX7A1P24310 79 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 ST3GAL4Q11206 333 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 YIF1BQ5BJH7 314 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 NHLRC3Q5JS37 347 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 C11orf88Q6PI97 169 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 HEPN1Q6WQI6 88 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 DTX3Q8N9I9 347 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 OR51A2Q8NGJ7 313 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 PIFOQ8TCI5 191 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 PGLYRP3Q96LB9 341 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 GAL3ST2Q9H3Q3 398 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 IFT22Q9H7X7 185 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 FKBP14Q9NWM8 211 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 TAS2R4Q9NYW5 299 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 FBLN5Q9UBX5 448 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 CLEC2DQ9UHP7 191 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 PSORS1C1Q9UIG5 152 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 TRGV10A0A0A0MS01 117 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 H0YJX3 145 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 SIRPB1O00241 398 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 IGFBP3P17936 291 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 CD34P28906 385 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 SOX2P48431 317 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 KCNJ3P48549 501 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 RPS11P62280 158 aaKnown RBP eCLIP12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 PPP3R1P63098 170 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 RNLSQ5VYX0 342 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 OR52W1Q6IF63 320 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 TFAP2CQ92754 450 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 GHSRQ92847 366 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 TMEM133Q9H2Q1 129 aa12.99□□□□□ -0.33
CCDC88C-209ENST00000554872 MEGF8Q7Z7M0 2845 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 A0A087X0M5 115 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 IGHV2-26A0A0B4J1V2 119 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 A0A1B0GX30 115 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 ODAMA1E959 279 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 ARG1P05089 322 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 ZNF44P15621 663 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 PTGFRP43088 359 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 BDH1Q02338 343 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 Q499Y3 187 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 LDLRAD2Q5SZI1 272 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 LHFPL4Q7Z7J7 247 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 RTN4RL2Q86UN3 420 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 CDH26Q8IXH8 852 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 TPRX1Q8N7U7 411 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 TNFAIP8L1Q8WVP5 186 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 THRSPQ92748 146 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 COQ2Q96H96 371 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 CLEC7AQ9BXN2 247 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 PPA2Q9H2U2 334 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 LINC00574Q9H8X3 128 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 OR6C3Q9NZP0 311 aa12.98□□□□□ -0.33
CCDC88C-209ENST00000554872 TRBV5-7A0A0A0MS05 114 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 DEGS1O15121 323 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 CALCBP10092 127 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 BDKRB2P30411 391 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 KIR2DS4P43632 304 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 SNU13P55769 128 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 RIPK1Q13546 671 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 BRICD5Q6PL45 260 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 LINC00596Q86U02 117 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 GPER1Q99527 375 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 PAK1IP1Q9NWT1 392 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 PITPNC1Q9UKF7 332 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 TCF19Q9Y242 345 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 VWFP04275 2813 aa12.97□□□□□ -0.33
CCDC88C-209ENST00000554872 TRAV24A0A0B4J272 114 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 MEGF11A6BM72 1044 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 ZNF729A6NN14 1252 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 TIMM23O14925 209 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 XPNPEP2O43895 674 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 ZNF780AO75290 641 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 IGLV1-47P01700 117 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 CGB3P0DN86 165 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 CGB7P0DN87 165 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 ZNF93P35789 620 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 GLIPR1P48060 266 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 WNT4P56705 351 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 KRTAP10-3P60369 221 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 SLC34A1Q06495 639 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 AESQ08117 197 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 KRBOX4Q5JUW0 171 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 DDI2Q5TDH0 399 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 TRAPPC6BQ86SZ2 158 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 DYNAPQ8N1N2 210 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 OR4C13Q8NGP0 309 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 NPFFR1Q9GZQ6 430 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 CKLFQ9UBR5 152 aa12.96□□□□□ -0.33
CCDC88C-209ENST00000554872 GABRA5P31644 462 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 OR3A4PP47883 348 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 EFNB2P52799 333 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 RSU1Q15404 277 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 SLC35E4Q6ICL7 350 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 TREML4Q6UXN2 200 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 AHSA2Q719I0 299 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 Q8N2B8 174 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 STX19Q8N4C7 294 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 NANOGP1Q8N7R0 232 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 OR4P4Q8NGL7 312 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms