RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 A0A087WWC5 75 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 A0A087WZY1 265 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 HSPB2A8KAH6 182 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 AQP7O14520 342 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 DVL1O14640 695 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 CYB5BO43169 146 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 ZIC3O60481 467 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 RAMP1O60894 148 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 CBR3O75828 277 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 TRGC2P03986 189 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 DANCRP0C864 163 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF25P17030 456 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-216ENST00000552909 TBPP20226 339 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 COL8A1P27658 744 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 RPL12P30050 165 aaKnown RBP6.65□□□□□ -1.34
LIMA1-216ENST00000552909 THBS4P35443 961 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 TAGLN2P37802 199 aaKnown RBP6.65□□□□□ -1.34
LIMA1-216ENST00000552909 SLC6A8P48029 635 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 SLC25A1P53007 311 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 SLC35A1P78382 337 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 JOSD1Q15040 202 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-216ENST00000552909 HSPB2Q16082 182 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 WDR38Q5JTN6 314 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 TMEM225Q6GV28 225 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF343Q6P1L6 599 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 POMZP3Q6PJE2 187 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 LINC00114Q6XXX2 140 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 DCXRQ7Z4W1 244 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 HOGA1Q86XE5 327 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF664Q8N3J9 261 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 OR6N2Q8NGY6 317 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 MFSD8Q8NHS3 518 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BLQ99880 126 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 SLC25A31Q9H0C2 315 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 GSKIPQ9P0R6 139 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 B4GALT7Q9UBV7 327 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 CGGBP1Q9UFW8 167 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-216ENST00000552909 GTF2A1LQ9UNN4 478 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 DHDHQ9UQ10 334 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 FBN2P35556 2912 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 TEX15Q9BXT5 2789 aa6.65□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF727A8MUV8 499 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 LDLRAD4O15165 306 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 PRH1P02810 166 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 TRGC1P0CF51 173 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 PGCP20142 388 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 FCGR2CP31995 323 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 CD200P41217 278 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 CDKN2AP42771 156 aaKnown RBP6.65□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM33P57088 247 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF260Q3ZCT1 412 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 SLC22A6Q4U2R8 563 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 RTL6Q6ICC9 239 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 PLXDC2Q6UX71 529 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 FAM219AQ8IW50 185 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 FOXRED2Q8IWF2 684 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF101Q8IZC7 436 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 LRRC18Q8N456 261 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 CHST4Q8NCG5 386 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 LFNGQ8NES3 379 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 SEMA6DQ8NFY4 1073 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 OR13C9Q8NGT0 318 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 GPR119Q8TDV5 335 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 ITLN2Q8WWU7 325 aaPredicted RBP6.65□□□□□ -1.35
LIMA1-216ENST00000552909 PTX4Q96A99 478 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 TSSK2Q96PF2 358 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 INTS14Q96SY0 518 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 SMIM3Q9BZL3 60 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 SMDT1Q9H4I9 107 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 WDR76Q9H967 626 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 OR14J1Q9UGF5 321 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 GOLT1BQ9Y3E0 138 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 FAM215AQ9Y5M1 114 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM14AQ9Y6G1 99 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 URGCP-MRPS24S4R325 110 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 CACNA1DQ01668 2161 aa6.65□□□□□ -1.35
LIMA1-216ENST00000552909 INTS1Q8N201 2190 aaKnown RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 TGIF2-C20orf24A0A0A6YYL0 155 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM269A0A1B0GVZ9 245 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SHISA8B8ZZ34 492 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 E9PLN8 166 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SEC11BP0C7V7 166 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 PNMTP11086 282 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 GP1BBP13224 206 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 CXCR1P25024 350 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 PRPS1P60891 318 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 UBE2KP61086 200 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 IL15RAQ13261 267 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ASPHD2Q6ICH7 369 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ALKBH2Q6NS38 261 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 DPY19L4Q7Z388 723 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 MRGPRGQ86SM5 289 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ATG4DQ86TL0 474 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 GPR137CQ8N3F9 429 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 JAGN1Q8N5M9 183 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 FADS6Q8N9I5 356 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM104Q8NE00 496 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 OR2M3Q8NG83 312 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 OR14L1PQ8NHC6 308 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 HPSE2Q8WWQ2 592 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms