RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 UMAD1C9J7I0 102 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 VAMP5O95183 116 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 ZNF806P0C7X5 589 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 B3GALT5-AS1P59052 145 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 RAC3P60763 192 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 DAZAP2Q15038 168 aaPredicted RBP12.97□□□□□ -0.33
USP28-214ENST00000545540 SPATA46Q5T0L3 261 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 DMBX1Q8NFW5 382 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 IL1F10Q8WWZ1 152 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 PRRG4Q9BZD6 226 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 FAM212BQ9NTI7 297 aaPredicted RBP12.97□□□□□ -0.33
USP28-214ENST00000545540 PLA2G3Q9NZ20 509 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 TUBD1Q9UJT1 453 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 SLC7A11Q9UPY5 501 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 ZNF716A6NP11 495 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 E5RGE8 158 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 PPYP01298 95 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 SNCAP37840 140 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 HIST1H3AP68431 136 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 HIST2H3PS2Q5TEC6 136 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 HIST2H3AQ71DI3 136 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 HIST1H2BAQ96A08 127 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 BCO1Q9HAY6 547 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 C19orf12Q9NSK7 152 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 NSG2Q9Y328 171 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 TAAR5O14804 337 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 GNRHRP30968 328 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 FOLR3P41439 243 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 MLF1P58340 268 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 CNN3Q15417 329 aaKnown RBP12.96□□□□□ -0.33
USP28-214ENST00000545540 GAPTQ8N292 157 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 OR2Y1Q8NGV0 311 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 OR51H1Q8NH63 302 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 HLA-CQ95604 372 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 FGF23Q9GZV9 251 aaPredicted RBP12.96□□□□□ -0.33
USP28-214ENST00000545540 ZNF286AQ9HBT8 521 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 PARP11Q9NR21 331 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 COA4Q9NYJ1 87 aa12.96□□□□□ -0.33
USP28-214ENST00000545540 SPTBN2O15020 2390 aa12.96□□□□□ -0.34
USP28-214ENST00000545540 ARGFXA6NJG6 315 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 ST8SIA3O43173 380 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 TXNL1O43396 289 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 ADAM20O43506 726 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 S100A6P06703 90 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 NQO2P16083 231 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 SURF2Q15527 256 aaPredicted RBP12.95□□□□□ -0.34
USP28-214ENST00000545540 ZNF818PQ6ZRF7 136 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 TBC1D26Q86UD7 250 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 EXTL1Q92935 676 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 SPSB1Q96BD6 273 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 CCL28Q9NRJ3 127 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 MMP24Q9Y5R2 645 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 BDP1A6H8Y1 2624 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 IGSF23A1L1A6 192 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 ACAA1P09110 424 aaPredicted RBP12.95□□□□□ -0.34
USP28-214ENST00000545540 SELEP16581 610 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 EIF5AP63241 154 aaKnown RBP12.95□□□□□ -0.34
USP28-214ENST00000545540 TMEM171Q8WVE6 324 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 GPR35Q9HC97 309 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 C3orf85A0A1B0GTC6 90 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 A0A1W2PR80 420 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 SYNGR1O43759 233 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 GLP1RP43220 463 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 BCL2L14Q9BZR8 327 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 SMCO4Q9NRQ5 59 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 PILRBQ9UKJ0 227 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 TIMM10BQ9Y5J6 103 aa12.95□□□□□ -0.34
USP28-214ENST00000545540 hCG_38984A0A1B0GV85 526 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 TERTO14746 1132 aaKnown RBP12.94□□□□□ -0.34
USP28-214ENST00000545540 TMEM50AO95807 157 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 FGF5P12034 268 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 NR2C1P13056 603 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 ZNF14P17017 642 aaPredicted RBP12.94□□□□□ -0.34
USP28-214ENST00000545540 ARF1P84077 181 aaKnown RBP12.94□□□□□ -0.34
USP28-214ENST00000545540 EWSR1Q01844 656 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP28-214ENST00000545540 TRIM61Q5EBN2 209 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 LINC00696Q6ZRV3 163 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 MED12LQ86YW9 2145 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 ZNF695Q8IW36 515 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 OR2G3Q8NGZ4 309 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 MGAQ8IWI9 3026 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 LOC102723996A0A087X1L8 192 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 PDCD6O75340 191 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 HOXA1P49639 335 aaPredicted RBP12.94□□□□□ -0.34
USP28-214ENST00000545540 RBM11P57052 281 aaKnown RBP12.94□□□□□ -0.34
USP28-214ENST00000545540 C20orf204Q6ZNR8 217 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 TUSC5Q8IXB3 177 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 UBAC2Q8NBM4 344 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 A0A087WZY1 265 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 BORCS7-ASMTA0A0B4J1R7 106 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 LRRC3CA6NJW4 275 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 ZNF724A8MTY0 619 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 MPPED1O15442 326 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 DANCRP0C864 163 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 MEOX2P50222 304 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 NCMAPQ5T1S8 102 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 TIPARPQ7Z3E1 657 aaKnown RBP12.94□□□□□ -0.34
USP28-214ENST00000545540 LGI3Q8N145 548 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 C18orf12Q96KH6 178 aa12.94□□□□□ -0.34
USP28-214ENST00000545540 FABP9Q0Z7S8 132 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms