RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 DCTN5Q9BTE1 182 aa14.54□□□□□ -0.08
CLSTN3-210ENST00000540931 TM2D1Q9BX74 207 aa14.54□□□□□ -0.08
CLSTN3-210ENST00000540931 RAB9BQ9NP90 201 aa14.54□□□□□ -0.08
CLSTN3-210ENST00000540931 HIF1ANQ9NWT6 349 aa14.54□□□□□ -0.08
CLSTN3-210ENST00000540931 DOCK11Q5JSL3 2073 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 IGHV2-70DA0A0C4DH43 119 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 A0A0G2JK05 382 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 hADV38S2A0JD32 116 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 A8MV72 311 aaPredicted RBP14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 MPIG6BO95866 241 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 AMY2BP19961 511 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 SERPINB10P48595 397 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 RORCP51449 518 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 LCN2P80188 198 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 MXD1Q05195 221 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 SCN1BQ07699 218 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 GRK1Q15835 563 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 CTF1Q16619 201 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 PAN3Q58A45 887 aaKnown RBP14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 HES5Q5TA89 166 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 RAB12Q6IQ22 244 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 Q6P435 159 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 KIR3DL3Q8N743 410 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 MAPK1IP1LQ8NDC0 245 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 SLC25A46Q96AG3 418 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 PHF21AQ96BD5 680 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 NUDT16L1Q9BRJ7 211 aaKnown RBP14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 DAPK2Q9UIK4 370 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 RPUSD1Q9UJJ7 312 aaKnown RBP14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 CR1P17927 2039 aa14.53□□□□□ -0.08
CLSTN3-210ENST00000540931 SHISA3A0PJX4 238 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 KIAA1324LA8MWY0 1029 aaPredicted RBP14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 SLC33A1O00400 549 aaPredicted RBP14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 GEMIN2O14893 280 aaKnown RBP14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 PHF1O43189 567 aaPredicted RBP14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 OR10A3P58181 314 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 VBP1P61758 197 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 LSM3P62310 102 aaKnown RBP14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 RPL31P62899 125 aaKnown RBP14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 QRFPP83859 136 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 P2RY14Q15391 338 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 TAF9Q16594 264 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 PIGYQ3MUY2 71 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 ATAD3CQ5T2N8 411 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 SLC16A12Q6ZSM3 486 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 BATF2Q8N1L9 274 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 ZNF565Q8N9K5 539 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 H1FXQ92522 213 aaKnown RBP14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 CMTM3Q96MX0 182 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 OR6C3Q9NZP0 311 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 INSIG2Q9Y5U4 225 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 KPTNQ9Y664 436 aa14.52□□□□□ -0.09
CLSTN3-210ENST00000540931 A0A0A6YYH2 397 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 SMIM31A0A1B0GVY4 71 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 A0A1W2PQ09 198 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 A6NJ64 397 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 SIRPB1O00241 398 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 PDCD6O75340 191 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 RBP4P02753 201 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 ZFP36P26651 326 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 DUSP1P28562 367 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 RPS19P39019 145 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 SNU13P55769 128 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 IDNKQ5T6J7 187 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 MZT2AQ6P582 158 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 C17orf107Q6ZR85 190 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 FAM89BQ8N5H3 189 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 LY6G5BQ8NDX9 201 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 TMEM104Q8NE00 496 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 FAM46BQ96A09 425 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 DPCDQ9BVM2 203 aaPredicted RBP14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 SHARPINQ9H0F6 387 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 RIMS4Q9H426 269 aaPredicted RBP14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 BANF2Q9H503 90 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 RCC2Q9P258 522 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 HSF4Q9ULV5 492 aa14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 YLPM1P49750 1951 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-210ENST00000540931 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.5□□□□□ -0.095e-6■■■□□ 16.7
CLSTN3-210ENST00000540931 CSPG4Q6UVK1 2322 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 MALRD1Q5VYJ5 2156 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 TRGV10A0A0A0MS01 117 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 M0R1W7 72 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 LDLRAD4O15165 306 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 ZNF16P17020 682 aaPredicted RBP14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 BPIFB3P59826 476 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 SEC61A1P61619 476 aaKnown RBP14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 NCS1P62166 190 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 HOXA4Q00056 320 aaPredicted RBP14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 METTL11BQ5VVY1 283 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 TRAT1Q6PIZ9 186 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 SUMF2Q8NBJ7 301 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 NEK7Q8TDX7 302 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 DCSTAMPQ9H295 470 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 YAE1D1Q9NRH1 226 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 IL36RNQ9UBH0 155 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 SPATA2Q9UM82 520 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 UBE2J1Q9Y385 318 aaPredicted RBP14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 LINC00312Q9Y6C7 94 aa14.5□□□□□ -0.09
CLSTN3-210ENST00000540931 TMEM272A0A1B0GTI8 110 aa14.49□□□□□ -0.09
CLSTN3-210ENST00000540931 TMEM82A0PJX8 343 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms