RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 FAM166BA8MTA8 275 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 GDF1P27539 372 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 ASCL1P50553 236 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 ZNF83P51522 516 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 KRTDAPP60985 99 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 PSG9Q00887 426 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 DLX2Q07687 328 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-214ENST00000540539 IGF2-ASQ6U949 168 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 WDR82Q6UXN9 313 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 PARS2Q7L3T8 475 aaKnown RBP8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CENPVQ7Z7K6 275 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CSNK1A1LQ8N752 337 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CHST4Q8NCG5 386 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 OR52M1Q8NGK5 317 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 OR2Y1Q8NGV0 311 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 OR4K13Q8NH42 304 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 PSMF1Q92530 271 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 LRFN3Q9BTN0 628 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 HDAC8Q9BY41 377 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CLEC1BQ9P126 229 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 GNG13Q9P2W3 67 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 NSG2Q9Y328 171 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 KCNE3Q9Y6H6 103 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CACNA1CQ13936 2221 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CEACAM18A8MTB9 384 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 TRAPPC2LH3BP13 241 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 SH2D1BO14796 132 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 XRCC2O43543 280 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CD99P14209 185 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 PTGER1P34995 402 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 GNMTQ14749 295 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 SRSF7Q16629 238 aaKnown RBP eCLIP8.24□□□□□ -1.09
CLIP1-214ENST00000540539 FFAR4Q5NUL3 377 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 RAET1LQ5VY80 246 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 ASPHD2Q6ICH7 369 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-214ENST00000540539 CMTM8Q8IZV2 173 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 OR8I2Q8N0Y5 310 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 PNKDQ8N490 385 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 TSEN15Q8WW01 171 aaKnown RBP8.24□□□□□ -1.09
CLIP1-214ENST00000540539 NKD1Q969G9 470 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 KXD1Q9BQD3 176 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 RSG1Q9BU20 258 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 EHFQ9NZC4 300 aa8.24□□□□□ -1.09
CLIP1-214ENST00000540539 SERF1AO75920 110 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 CKMP06732 381 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 IGLC1P0CG04 106 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 AK4P27144 223 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-214ENST00000540539 LTBRP36941 435 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 CSNK1G2P78368 415 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 PLAURQ03405 335 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 BAXQ07812 192 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 HLA-BQ31612 363 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 PLEKHS1Q5SXH7 462 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 GLYATL3Q5SZD4 288 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 ADGRE4PQ86SQ3 457 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 ZNF595Q8IYB9 648 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 MUC15Q8N387 334 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 KLHDC1Q8N7A1 406 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 ZNF676Q8N7Q3 588 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 OR6K6Q8NGW6 343 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 FNDC9Q8TBE3 224 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 GPR84Q9NQS5 396 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 GPR27Q9NS67 375 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 TRAPPC1Q9Y5R8 145 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 IGLV3-27P01718 113 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 HIST1H1CP16403 213 aaKnown RBP8.23□□□□□ -1.09
CLIP1-214ENST00000540539 CEBPBP17676 345 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 CDKN2AP42771 156 aaKnown RBP8.23□□□□□ -1.09
CLIP1-214ENST00000540539 CLDN15P56746 228 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 SQSTM1Q13501 440 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 COL9A2Q14055 689 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-214ENST00000540539 MSMO1Q15800 293 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 OXLD1Q5BKU9 147 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 AGTRAPQ6RW13 159 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 ZIC4Q8N9L1 334 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 OR5B3Q8NH48 314 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 CDX2Q99626 313 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-214ENST00000540539 KLF16Q9BXK1 252 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-214ENST00000540539 FBRSQ9HAH7 460 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 PPP1R3CQ9UQK1 317 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 PXMP4Q9Y6I8 212 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 ZNF780BQ9Y6R6 833 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 EML5Q05BV3 1969 aa8.23□□□□□ -1.09
CLIP1-214ENST00000540539 SPAARA0A1B0GVQ0 90 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 OR6C6A6NF89 314 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 TRAF3IP2O43734 574 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-214ENST00000540539 RBMXL2O75526 392 aaKnown RBP8.22□□□□□ -1.09
CLIP1-214ENST00000540539 OR10J4P0C629 311 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 KITLGP21583 273 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 IL3RAP26951 378 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 S100GP29377 79 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 PTGER4P35408 488 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 HERV-K104P63124 156 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 EIPR1Q53HC9 387 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 TMEM177Q53S58 311 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 GPR157Q5UAW9 335 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 ZC2HC1AQ96GY0 325 aa8.22□□□□□ -1.09
CLIP1-214ENST00000540539 MBNL1Q9NR56 388 aaKnown RBP8.22□□□□□ -1.09
CLIP1-214ENST00000540539 KLHL13Q9P2N7 655 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms