RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 USH1CQ9Y6N9 552 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 SHANK1Q9Y566 2161 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 YLPM1P49750 1951 aaKnown RBP1.39□□□□□ -2.19
CD44-238ENST00000534296 ZBED9Q6R2W3 1325 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 DHX57Q6P158 1386 aaKnown RBP1.38□□□□□ -2.19
CD44-238ENST00000534296 TRAV8-3A0A0A6YYJ7 113 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 TRAV8-2A0A0B4J237 113 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 A0A0B4J2C4 111 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 PGPA6NDG6 321 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 ZNF879B4DU55 563 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 C4orf51C9J302 202 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 K7EPK0 472 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 UPK1AO00322 258 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 GYG2O15488 501 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 CRXO43186 299 aaPredicted RBP1.38□□□□□ -2.19
CD44-238ENST00000534296 EEF1E1O43324 174 aaKnown RBP1.38□□□□□ -2.19
CD44-238ENST00000534296 ZMPSTE24O75844 475 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 MYO1DO94832 1006 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 LDOC1O95751 146 aaPredicted RBP1.38□□□□□ -2.19
CD44-238ENST00000534296 GPR75O95800 540 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 IGHMP01871 453 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 GCLMP48507 274 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 ETV1P50549 477 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 FAM53BQ14153 422 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 TNXAQ16473 311 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 CEACAM21Q3KPI0 293 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 Q499Y3 187 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 PDZD11Q5EBL8 140 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 CLLU1OSQ5K130 101 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 KRTAP5-7Q6L8G8 165 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 PRNTQ86SH4 94 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 EIF4E3Q8N5X7 224 aaKnown RBP1.38□□□□□ -2.19
CD44-238ENST00000534296 ZFP62Q8NB50 900 aaPredicted RBP1.38□□□□□ -2.19
CD44-238ENST00000534296 ACBD4Q8NC06 268 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 ATP6V1C2Q8NEY4 427 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 FMC1Q96HJ9 113 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 IGF2BP2-AS1Q96M15 143 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 CFAP53Q96M91 514 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 OLFM3Q96PB7 478 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 CYTH2Q99418 400 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 PRRG3Q9BZD7 231 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 LRRC19Q9H756 370 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 PLEKHA1Q9HB21 404 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 AGPAT3Q9NRZ7 376 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 KCNIP2Q9NS61 270 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 STMN3Q9NZ72 180 aa1.38□□□□□ -2.19
CD44-238ENST00000534296 RBMX2Q9Y388 322 aaKnown RBP1.38□□□□□ -2.19
CD44-238ENST00000534296 NID2Q14112 1375 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 A6NED7 52 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 ZNF729A6NN14 1252 aaPredicted RBP1.37□□□□□ -2.19
CD44-238ENST00000534296 ZNF878C9JN71 531 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 RNASEK-C17orf49H0YIS7 233 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 H3BQ85 93 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 M0QXV9 152 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 SLC31A1O15431 190 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 AQP9O43315 295 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 HLA-AP01891 365 aaKnown RBP1.37□□□□□ -2.19
CD44-238ENST00000534296 GYPCP04921 128 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 INAFM2P0DMQ5 153 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 NQO2P16083 231 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 ZNF708P17019 499 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 GZMMP51124 257 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 HADHBP55084 474 aaKnown RBP1.37□□□□□ -2.19
CD44-238ENST00000534296 TMED1Q13445 227 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 CST6Q15828 149 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 BSXQ3C1V8 233 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 LINC00303Q3SY05 128 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 LAMTOR1Q6IAA8 161 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 DGAT2L6Q6ZPD8 337 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 FAM19A1Q7Z5A9 133 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 MRPL52Q86TS9 123 aaKnown RBP1.37□□□□□ -2.19
CD44-238ENST00000534296 SYCE1Q8N0S2 351 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 GAPTQ8N292 157 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 TCAIMQ8N3R3 496 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 RPRMLQ8N4K4 120 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 C3orf22Q8N5N4 141 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 SPERTQ8NA61 448 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 FER1L6-AS1Q8NA97 138 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 OR4K13Q8NH42 304 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 SPPL2BQ8TCT7 592 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 CCDC12Q8WUD4 166 aaPredicted RBP1.37□□□□□ -2.19
CD44-238ENST00000534296 CLDN23Q96B33 292 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 FXYD5Q96DB9 178 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 C19orf60Q96EN9 201 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 SLC25A44Q96H78 314 aaPredicted RBP1.37□□□□□ -2.19
CD44-238ENST00000534296 PYURFQ96I23 114 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 ZNF75AQ96N20 296 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 LINC01587Q99440 93 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 FAAP24Q9BTP7 215 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 TAPBPLQ9BX59 468 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 ZNF586Q9NXT0 402 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 COMMD9Q9P000 198 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 POMPQ9Y244 141 aa1.37□□□□□ -2.19
CD44-238ENST00000534296 VGLL3A8MV65 326 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 E7EQL1 145 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 TOR1AO14656 332 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 TP53I11O14683 189 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 SETD1AO15047 1707 aaKnown RBP1.36□□□□□ -2.19
CD44-238ENST00000534296 CRTAPO75718 401 aaPredicted RBP1.36□□□□□ -2.19
CD44-238ENST00000534296 BRI3O95415 125 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms