RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 OR56B4Q8NH76 319 aa3.7□□□□□ -1.82
CD44-220ENST00000525688 FLVCR1-AS1Q8TAF5 88 aa3.7□□□□□ -1.82
CD44-220ENST00000525688 IMP4Q96G21 291 aaKnown RBP3.7□□□□□ -1.82
CD44-220ENST00000525688 ZNF717Q9BY31 904 aaPredicted RBP3.7□□□□□ -1.82
CD44-220ENST00000525688 YTHDF1Q9BYJ9 559 aaKnown RBP3.7□□□□□ -1.82
CD44-220ENST00000525688 ZNF442Q9H7R0 627 aa3.7□□□□□ -1.82
CD44-220ENST00000525688 FAM206AQ9NX38 181 aa3.7□□□□□ -1.82
CD44-220ENST00000525688 SLC7A11Q9UPY5 501 aa3.7□□□□□ -1.82
CD44-220ENST00000525688 SNX10Q9Y5X0 201 aa3.7□□□□□ -1.82
CD44-220ENST00000525688 IGHV3-16A0A0C4DH30 117 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 LOC100131303A0A0U1RQF7 123 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 A6NDN8 102 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 LOC730098B7Z3J9 87 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 ANKRD65E5RJM6 399 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 SLC31A2O15432 143 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 EIF3GO75821 320 aaKnown RBP eCLIP3.69□□□□□ -1.82
CD44-220ENST00000525688 HPRT1P00492 218 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 SEMG1P04279 462 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 WARSP23381 471 aaKnown RBP3.69□□□□□ -1.82
CD44-220ENST00000525688 RPL12P30050 165 aaKnown RBP3.69□□□□□ -1.82
CD44-220ENST00000525688 SPRP35270 261 aaPredicted RBP3.69□□□□□ -1.82
CD44-220ENST00000525688 GALR1P47211 349 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 TAF6P49848 677 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 RAB7AP51149 207 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 RORCP51449 518 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 SUB1P53999 127 aaKnown RBP eCLIP3.69□□□□□ -1.82
CD44-220ENST00000525688 RAB38P57729 211 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 IL5RAQ01344 420 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 CD300CQ08708 224 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 ZNF235Q14590 738 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 CEACAM21Q3KPI0 293 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 SLC25A35Q3KQZ1 300 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 WDR74Q6RFH5 385 aaPredicted RBP3.69□□□□□ -1.82
CD44-220ENST00000525688 OLIG3Q7RTU3 272 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 C10orf107Q8IVU9 208 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 PRR22Q8IZ63 422 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 ZNF491Q8N8L2 437 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 GATD1Q8NB37 220 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 COQ8AQ8NI60 647 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 ARPC1AQ92747 370 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 ZMYND19Q96E35 227 aaPredicted RBP3.69□□□□□ -1.82
CD44-220ENST00000525688 MRAP2Q96G30 205 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 TMEM80Q96HE8 168 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 C18orf12Q96KH6 178 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 RARRES2Q99969 163 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 AIF1LQ9BQI0 150 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 C20orf144Q9BQM9 153 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 PECRQ9BY49 303 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 MS4A6AQ9H2W1 248 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 OR51J1Q9H342 316 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 POMKQ9H5K3 350 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 JPT2Q9H910 190 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 UGT1A8Q9HAW9 530 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 ARMC1Q9NVT9 282 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 VPS29Q9UBQ0 182 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 RWDD2AQ9UIY3 292 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 PRSS21Q9Y6M0 314 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 SCN1AP35498 2009 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 PLXNA3P51805 1871 aa3.69□□□□□ -1.82
CD44-220ENST00000525688 MTCL1Q9Y4B5 1905 aaKnown RBP3.68□□□□□ -1.82
CD44-220ENST00000525688 TSC2P49815 1807 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TGIF2-C20orf24A0A0A6YYL0 155 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 IGHV2OR16-5A0A0B4J2B6 119 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 A0A1B0GWB2 263 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 A0A1W2PPR1 153 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR6C6A6NF89 314 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 CEACAM18A8MTB9 384 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 ZNF878C9JN71 531 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 F5H5K5 113 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TSTD3H0UI37 97 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TNFRSF11BO00300 401 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 ICOSLGO75144 302 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 SUPT3HO75486 399 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 VENTXO95231 258 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 SEMA4FO95754 770 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 CRYZL1O95825 349 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 NUDT14O95848 222 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR4Q2P0C623 313 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 AKR1C4P17516 323 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 USF1P22415 310 aaPredicted RBP3.68□□□□□ -1.82
CD44-220ENST00000525688 F2RP25116 425 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 GPX4P36969 197 aaPredicted RBP3.68□□□□□ -1.82
CD44-220ENST00000525688 SRP9P49458 86 aaKnown RBP3.68□□□□□ -1.82
CD44-220ENST00000525688 GSK3BP49841 420 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 GPM6AP51674 278 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 CDKN2DP55273 166 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 AP1S2P56377 157 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 RAB25P57735 213 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR12D2P58182 307 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 MS4A2Q01362 244 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 ZNF45Q02386 682 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 PAX8Q06710 450 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 EDDM3AQ14507 147 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 CLINT1Q14677 625 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 FCN2Q15485 313 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR7A5Q15622 319 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 HIST3H3Q16695 136 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 LRRC75BQ2VPJ9 315 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 PYCR3Q53H96 274 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TMEM97Q5BJF2 176 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms