RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 MRPL21Q7Z2W9 205 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 SH2D6Q7Z4S9 175 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SPATA24Q86W54 205 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ZNF584Q8IVC4 421 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 LAX1Q8IWV1 398 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 LINC00471Q8N535 108 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 FAM86B1Q8N7N1 296 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 LRRC75AQ8NAA5 344 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 BHLHE23Q8NDY6 225 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SDR9C7Q8NEX9 313 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 PROKR2Q8NFJ6 384 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OR6K6Q8NGW6 343 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OR2T4Q8NH00 348 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OR1F12Q8NHA8 337 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 CLDND2Q8NHS1 167 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 TEX47Q8TBZ9 253 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SLC7A13Q8TCU3 470 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 KLF14Q8TD94 323 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 SPRYD4Q8WW59 207 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 YIPF5Q969M3 257 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SPTSSAQ969W0 71 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 APOBEC3DQ96AK3 386 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 TMEM186Q96B77 213 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 PLEKHA8Q96JA3 519 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SAMD8Q96LT4 415 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 C1orf147Q96MC9 270 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 CCT8L2Q96SF2 557 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 NMNAT3Q96T66 252 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ATF6BQ99941 703 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 COPS4Q9BT78 406 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 THTPAQ9BU02 230 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 TSSK6Q9BXA6 273 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OCR1Q9BZK8 76 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 HDHD2Q9H0R4 259 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OR52D1Q9H346 318 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 METTL17Q9H7H0 456 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 YY1AP1Q9H869 796 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 RPRD1BQ9NQG5 326 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 CENPMQ9NSP4 180 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 MYEF2Q9P2K5 600 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 PURGQ9UJV8 347 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 SIGLEC7Q9Y286 467 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SAMHD1Q9Y3Z3 626 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 UGT2A1Q9Y4X1 527 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 U3KQV3 271 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 PKD1L1Q8TDX9 2849 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 AKAP9Q99996 3911 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 APCP25054 2843 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 IGLV3-9A0A075B6K5 115 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 IGHV3-16A0A0C4DH30 117 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 IGHV3-64DA0A0J9YX35 117 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 TVP23AA6NH52 213 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 ZSCAN5BA6NJL1 495 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 LRRC30A6NM36 301 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 H3BSA7 217 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 DYNC1I1O14576 645 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 RER1O15258 196 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 PHF1O43189 567 aaPredicted RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 BCL2L11O43521 198 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 FOXH1O75593 365 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 SOX14O95416 240 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 FAM107AO95990 144 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 CST1P01037 141 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 TACSTD2P09758 323 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 COX5BP10606 129 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 HIST1H1CP16403 213 aaKnown RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 CTLA4P16410 223 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 ZNF3P17036 446 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 TUBG1P23258 451 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 GLRA1P23415 457 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 HSD11B1P28845 292 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 FMO3P31513 532 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 IL2RGP31785 369 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 PYCR1P32322 319 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 CRYBB2P43320 205 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 SRP9P49458 86 aaKnown RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 ZNF133P52736 654 aaPredicted RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 NDUFV3P56181 108 aaKnown RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 LSM6P62312 80 aaKnown RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 ACTG1P63261 375 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 LCN2P80188 198 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 MRPS11P82912 194 aaKnown RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 SLC34A1Q06495 639 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 COX10Q12887 443 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 PPP1R8Q12972 351 aaKnown RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 TSPAN31Q12999 210 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 ECH1Q13011 328 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 MEF2DQ14814 521 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 OR8G1Q15617 311 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 DNAL1Q4LDG9 190 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 KLHL12Q53G59 568 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 LCE3AQ5TA76 89 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 OR2T5Q6IEZ7 315 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 OR2T2Q6IF00 324 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.87□□□□□ -1.95
NUP54-212ENST00000513248 ZNF101Q8IZC7 436 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 BPIFB2Q8N4F0 458 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 SPICQ8N5J4 248 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 ZNF283Q8N7M2 679 aa2.87□□□□□ -1.95
NUP54-212ENST00000513248 CYB561A3Q8NBI2 242 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 165.2 ms