RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 KCNIP3Q9Y2W7 256 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 MEMO1Q9Y316 297 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 CACNA1GO43497 2377 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 F5H0A9 414 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 C3orf80F5H4A9 247 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 PPYP01298 95 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 OR5AC1P0C628 307 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 UCP2P55851 309 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 IAH1Q2TAA2 248 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 SP6Q3SY56 376 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 C5orf24Q7Z6I8 188 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 PDZD9Q8IXQ8 264 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 RBPMSQ93062 196 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 MRPL24Q96A35 216 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 SLC25A32Q9H2D1 315 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 SDHAF2Q9NX18 166 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 RASL12Q9NYN1 266 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 MFSD2BA6NFX1 497 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 RAC2P15153 192 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 ALKBH6Q3KRA9 238 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 GGNBP1Q5YKI7 109 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 ZNF585AQ6P3V2 769 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 OR5T2Q8NGG2 359 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 OR1J1Q8NGS3 322 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 C1QTNF6Q9BXI9 259 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 PLSCR4Q9NRQ2 329 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 SHANK1Q9Y566 2161 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 TRAV24A0A0B4J272 114 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 MSGN1A6NI15 193 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 AGFG2O95081 481 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 IGKV3-15P01624 115 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 SCTP09683 121 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 PET100P0DJ07 73 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 ZNF250P15622 560 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 HOXC12P31275 282 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 FAM76BQ5HYJ3 339 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 OR11L1Q8NGX0 322 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 GTF3AQ92664 365 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 PHYHIPLQ96FC7 376 aa17.98■□□□□ 0.47
CCDC88B-208ENST00000492980 LRP5LA4QPB2 252 aa17.97■□□□□ 0.47
CCDC88B-208ENST00000492980 IQCF6A8MYZ5 107 aa17.97■□□□□ 0.47
CCDC88B-208ENST00000492980 FAM74A1Q5RGS3 127 aa17.97■□□□□ 0.47
CCDC88B-208ENST00000492980 MRPL30Q8TCC3 161 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-208ENST00000492980 ADAT1Q9BUB4 502 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-208ENST00000492980 SUCNR1Q9BXA5 334 aa17.97■□□□□ 0.47
CCDC88B-208ENST00000492980 TNFSF13O75888 250 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 IFNA21P01568 189 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 S100A10P60903 97 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 PSG7Q13046 419 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 HERPUD1Q15011 391 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 UNQ6126/PRO20091Q6UXV3 157 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 LRTM2Q8N967 370 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 AQP10Q96PS8 301 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 SYT3Q9BQG1 590 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 IFT22Q9H7X7 185 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 RHOFQ9HBH0 211 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 TUBD1Q9UJT1 453 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 SPENQ96T58 3664 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 KIR2DS1A0A191URI9 304 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 TRDCB7Z8K6 153 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 HS3ST1O14792 307 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 KIR2DS4P43632 304 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 KIR2DS1Q14954 304 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 CCDC28AQ8IWP9 274 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 CCDC71LQ8N9Z2 235 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 SCCPDHQ8NBX0 429 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 STOML3Q8TAV4 291 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 RDH5Q92781 318 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 PRRX2Q99811 253 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 RIMS4Q9H426 269 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 PFDN2Q9UHV9 154 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 ATP23Q9Y6H3 246 aa17.96■□□□□ 0.47
CCDC88B-208ENST00000492980 TRBV6-6A0A0A6YYG2 114 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 BET1O15155 118 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 WDR1O75083 606 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 TK1P04183 234 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 GLAP06280 429 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 NUP62P37198 522 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 MPV17P39210 176 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 LIAT1Q6ZQX7 453 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 SEM1Q6ZVN7 128 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 CXorf67Q86X51 503 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 STARD4Q96DR4 205 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 CNTNAP3BQ96NU0 1288 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 CNTNAP3Q9BZ76 1288 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 CYTL1Q9NRR1 136 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 DNAJB11Q9UBS4 358 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 SHOXO15266 292 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 DIRAS3O95661 229 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 CGAP01215 116 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 SELEP16581 610 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 Q6P435 159 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 C20orf204Q6ZNR8 217 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 Q6ZS92 163 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 ZNF610Q8N9Z0 462 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 KLF14Q8TD94 323 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 GLYATL2Q8WU03 294 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 MSI2Q96DH6 328 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 C18orf12Q96KH6 178 aa17.95■□□□□ 0.46
CCDC88B-208ENST00000492980 OPN3Q9H1Y3 402 aaPredicted RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms