RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR1S1Q8NH92 325 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FAM110BQ8TC76 370 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SPPL2BQ8TCT7 592 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TBCKQ8TEA7 893 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ORAOV1Q8WV07 137 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PIH1D2Q8WWB5 315 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 C1orf54Q8WWF1 131 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ASB17Q8WXJ9 295 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 C11orf40Q8WZ69 217 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GGHQ92820 318 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GHSRQ92847 366 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SMARCD2Q92925 531 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 HIST1H2BAQ96A08 127 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL24Q96A35 216 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM186Q96B77 213 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PINX1Q96BK5 328 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 NTNG2Q96CW9 530 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SNRNP40Q96DI7 357 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC41A3Q96GZ6 507 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SFRP2Q96HF1 295 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 REEP6Q96HR9 211 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SENP8Q96LD8 212 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PRAP1Q96NZ9 151 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ERMAPQ96PL5 475 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TP53RKQ96S44 253 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CLCC1Q96S66 551 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 RASL10BQ96S79 203 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF607Q96SK3 696 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CPXM1Q96SM3 734 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TBX5Q99593 518 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PKMYT1Q99640 499 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC6A7Q99884 636 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FOXC2Q99958 501 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 AIF1LQ9BQI0 150 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GINS4Q9BRT9 223 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FAAP24Q9BTP7 215 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MED10Q9BTT4 135 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FICDQ9BVA6 458 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 NUDT9Q9BW91 350 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TM6SF2Q9BZW4 377 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR2J1Q9GZK6 312 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 C20orf27Q9GZN8 174 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF350Q9GZX5 532 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 RAB1BQ9H0U4 201 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ABCG5Q9H222 651 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ARV1Q9H2C2 271 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC38A1Q9H2H9 487 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 METTL17Q9H7H0 456 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC2A9Q9NRM0 540 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CBLN4Q9NTU7 201 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ASF1BQ9NVP2 202 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 C1orf109Q9NX04 203 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ADA2Q9NZK5 511 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DHRS4-AS1Q9P1J3 65 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PEF1Q9UBV8 284 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DUX4Q9UBX2 424 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SS18L2Q9UHA2 77 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SMPXQ9UHP9 88 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 NEU3Q9UQ49 428 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PDE10AQ9Y233 779 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ANGPT4Q9Y264 503 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35A3Q9Y2D2 325 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 RFNGQ9Y644 331 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MYH2Q9UKX2 1941 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MEGF8Q7Z7M0 2845 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 KMT2CQ8NEZ4 4911 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PCDH15Q96QU1 1955 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 NFASCO94856 1347 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 EPPK1P58107 5090 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 LOXHD1Q8IVV2 1947 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MTCL1Q9Y4B5 1905 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MEIKINA0A087WXM9 373 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 A0A087WZY1 265 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 A0A087X0K7 114 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 A0A087X0T9 212 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TRAV25A0A0B4J276 109 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 FAM240BA0A1B0GVZ2 78 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ANKRD20A5PA0PJZ0 165 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SMCO3A2RU48 225 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RBMY1BA6NDE4 496 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RBMY1EA6NEQ0 496 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR5H14A6NHG9 310 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF724A8MTY0 619 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF705GA8MUZ8 300 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 BTNL10A8MVZ5 291 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SEC14L6B5MCN3 397 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 C9J4A7 227 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 F8WDY8 70 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 M0QXV9 152 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MRASO14807 208 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF208O43345 1280 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 KDELR3O43731 214 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SLC37A4O43826 429 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MFSD11O43934 449 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TPST1O60507 370 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF253O75346 499 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RDH16O75452 317 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SCGNO76038 276 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TNFSF15O95150 251 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 STBD1O95210 358 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms