RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LRP5LA4QPB2 252 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 HFEQ30201 348 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 ZNF528Q3MIS6 628 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 S1PR3Q99500 378 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 GPR35Q9HC97 309 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 GNG13Q9P2W3 67 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 OR8G2PQ6IF36 304 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 ZFP62Q8NB50 900 aaPredicted RBP9.67□□□□□ -0.86
HDAC6-228ENST00000486227 ADAT3Q96EY9 351 aaPredicted RBP9.67□□□□□ -0.86
HDAC6-228ENST00000486227 ANGPTL4Q9BY76 406 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 RAB1BQ9H0U4 201 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 FBXL17Q9UF56 701 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 OSGIN2Q9Y236 505 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 MED12Q93074 2177 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 MEX3AA1L020 520 aaKnown RBP9.67□□□□□ -0.86
HDAC6-228ENST00000486227 SOCS1O15524 211 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 NDUFB3O43676 98 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 UPK3AO75631 287 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 MBP02144 154 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 GSK3AP49840 483 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 HTD2P86397 168 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 KRTCAP3Q53RY4 240 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 LRRC10Q5BKY1 277 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 NUFIP2Q7Z417 695 aaKnown RBP9.67□□□□□ -0.86
HDAC6-228ENST00000486227 SLC25A38Q96DW6 304 aa9.67□□□□□ -0.86
HDAC6-228ENST00000486227 MTCL1Q9Y4B5 1905 aaKnown RBP9.67□□□□□ -0.86
HDAC6-228ENST00000486227 ELOA3CA0A087WX78 387 aaPredicted RBP9.66□□□□□ -0.86
HDAC6-228ENST00000486227 ZNF727A8MUV8 499 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 PPIHO43447 177 aaKnown RBP9.66□□□□□ -0.86
HDAC6-228ENST00000486227 CST2P09228 141 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 DEFA4P12838 97 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 HOXB1P14653 301 aaPredicted RBP9.66□□□□□ -0.86
HDAC6-228ENST00000486227 AADACP22760 399 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 PSMB3P49720 205 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 EFNB2P52799 333 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 H2BFSP57053 126 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 ZNF429Q86V71 674 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 TMEM123Q8N131 208 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 EIF4E3Q8N5X7 224 aaKnown RBP9.66□□□□□ -0.86
HDAC6-228ENST00000486227 AMDHD2Q9Y303 409 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 F12P00748 615 aaPredicted RBP9.66□□□□□ -0.86
HDAC6-228ENST00000486227 KLF3P57682 345 aaPredicted RBP9.66□□□□□ -0.86
HDAC6-228ENST00000486227 EGR4Q05215 589 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 PCOLCEQ15113 449 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 TSPO2Q5TGU0 170 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 APCDD1LQ8NCL9 501 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 GUCD1Q96NT3 240 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 MAGT1Q9H0U3 335 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 SLC26A1Q9H2B4 701 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 TMEM38BQ9NVV0 291 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 MS4A18H0YCH9 400 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 DNPH1O43598 174 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 NPBWR1P48145 328 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 MICBQ29980 383 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 MS4A18Q3C1V0 323 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 PARP11Q9NR21 331 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 KIAA1456Q9P272 454 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 HEATR5BQ9P2D3 2071 aa9.66□□□□□ -0.86
HDAC6-228ENST00000486227 ATXN7O15265 892 aaPredicted RBP9.65□□□□□ -0.86
HDAC6-228ENST00000486227 GDF9O60383 454 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 PDCD6O75340 191 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 TTRP02766 147 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 ARG1P05089 322 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 ZNF17P17021 662 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 BHLHA15Q7RTS1 189 aaPredicted RBP9.65□□□□□ -0.86
HDAC6-228ENST00000486227 H2BFWTQ7Z2G1 175 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 A0A087X0M5 115 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 IGLV1-36A0A0B4J1U3 117 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 A0A1B0GX30 115 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 NPIPB9F8W1W9 429 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 KLF4O43474 513 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 ZNF574Q6ZN55 896 aaPredicted RBP9.65□□□□□ -0.86
HDAC6-228ENST00000486227 FAM58AQ8N1B3 248 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 LINC00469Q8N7U9 141 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 PLPPR2Q96GM1 343 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 TTTY12Q9BZ98 90 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 OR2H1Q9GZK4 316 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 PRO1933Q9H354 126 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 DOCK8Q8NF50 2099 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 IGKV3D-11A0A0A0MRZ8 115 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 CDX4O14627 284 aaPredicted RBP9.65□□□□□ -0.86
HDAC6-228ENST00000486227 ADAP1O75689 374 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 PNPP00491 289 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 COX6A1P12074 109 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 ACP1P24666 158 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 SULT1A1P50225 295 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 CD81P60033 236 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 BAXQ07812 192 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 OR8U1Q8NH10 309 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 SUCNR1Q9BXA5 334 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 TLNRD1Q9H1K6 362 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 WSB1Q9Y6I7 421 aa9.65□□□□□ -0.86
HDAC6-228ENST00000486227 DNASE2O00115 360 aaPredicted RBP9.65□□□□□ -0.87
HDAC6-228ENST00000486227 EIF3GO75821 320 aaKnown RBP eCLIP9.65□□□□□ -0.87
HDAC6-228ENST00000486227 PRAMEF5Q5TYX0 476 aa9.65□□□□□ -0.87
HDAC6-228ENST00000486227 PRAMEF6Q5VXH4 476 aa9.65□□□□□ -0.87
HDAC6-228ENST00000486227 GGNBP1Q5YKI7 109 aa9.65□□□□□ -0.87
HDAC6-228ENST00000486227 RAB1CQ92928 201 aa9.65□□□□□ -0.87
HDAC6-228ENST00000486227 KCNK17Q96T54 332 aa9.65□□□□□ -0.87
HDAC6-228ENST00000486227 MYOZ1Q9NP98 299 aaPredicted RBP9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms