RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MITD1Q8WV92 249 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 TMEM230Q96A57 120 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 MRGPRFQ96AM1 343 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 RRNAD1Q96FB5 475 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 C1orf123Q9NWV4 160 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 MTCH1Q9NZJ7 389 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 DUX4Q9UBX2 424 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 GPR132Q9UNW8 380 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 hCG_38984A0A1B0GV85 526 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 IL2RGP31785 369 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 BTNL3Q6UXE8 466 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 GAPTQ8N292 157 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 SCARB1Q8WTV0 552 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 Q96M66 194 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 ARPC5LQ9BPX5 153 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 EIF5A2Q9GZV4 153 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 SLC2A9Q9NRM0 540 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 NOTCH2Q04721 2471 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 CREBBPQ92793 2442 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 A0A1W2PPE3 182 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 PROB1E7EW31 1015 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 F8W036 122 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 NMBP08949 121 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 TNFSF10P50591 281 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 ZNF133P52736 654 aaPredicted RBP11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 BLOC1S1P78537 153 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 RBM39Q14498 530 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 MPPED2Q15777 294 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 TUSC1Q2TAM9 212 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 WFDC8Q8IUA0 241 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 FAM24AA6NFZ4 105 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 CRYGSP22914 178 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 PTAFRP25105 342 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 SCAND1P57086 179 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 TFAP2EQ6VUC0 442 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 ADGRG7Q96K78 797 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 DCTN5Q9BTE1 182 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 LIME1Q9H400 295 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 ARHGAP21Q5T5U3 1957 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 H0YIZ8 118 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 K7EM74 188 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 FPR2P25090 351 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 PPT1P50897 306 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 GNMTQ14749 295 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 FAM58AQ8N1B3 248 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 CD300LFQ8TDQ1 290 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 DMRTA2Q96SC8 542 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 RTBDNQ9BSG5 229 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 PCDHB10Q9UN67 800 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 LOC390937A0A1W2PQ73 354 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 ARR3P36575 388 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 AESQ08117 197 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 ZNF816Q0VGE8 651 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 KCNRGQ8N5I3 272 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 MRGPRDQ8TDS7 321 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 MED30Q96HR3 178 aa11.8□□□□□ -0.52
CCDC88A-211ENST00000471947 HMGB3O15347 200 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 CD74P04233 296 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 NFYBP25208 207 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 RPL12P30050 165 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 WNT5AP41221 380 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 FHITP49789 147 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 RBM11P57052 281 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 JMJD6Q6NYC1 403 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 C9orf106Q8NAJ2 232 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 OR1K1Q8NGR3 316 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 OCSTAMPQ9BR26 566 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 PCDHB16Q9NRJ7 776 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 TRAV17A0A0B4J275 112 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 LINC00205P59089 165 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 NHLH2Q02577 135 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 OR52M1Q8NGK5 317 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 NSG2Q9Y328 171 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 CSPG4Q6UVK1 2322 aa11.79□□□□□ -0.52
CCDC88A-211ENST00000471947 M0R036 132 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 OR2A4O95047 310 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 TPT1P13693 172 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 MPGP29372 298 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 PRB3Q04118 309 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 ZNF169Q14929 603 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 SHEQ5VZ18 495 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 ABLIM2Q6H8Q1 611 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 OVCH2Q7RTZ1 564 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 DPPA2Q7Z7J5 298 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 ZDHHC22Q8N966 263 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 OR10J5Q8NHC4 309 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 HPSE2Q8WWQ2 592 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 NINJ1Q92982 152 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 OR2A7Q96R45 310 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 OR1A1Q9P1Q5 309 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 V9GYS6 101 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 NOTCH3Q9UM47 2321 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 A0A0D9SG52 128 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 IL18BPO95998 194 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 KRASP01116 189 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 CHATP28329 748 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 MPV17P39210 176 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 GNG3P63215 75 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 RNPS1Q15287 305 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 CMTM1Q8IZ96 169 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms