RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 IGKV1D-33P01593 117 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 IGKV1-33P01594 117 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 ELANEP08246 267 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 H2BFMP0C1H6 154 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 TMEM11P17152 192 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 PSMB8P28062 276 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 FMO3P31513 532 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 SLC15A1P46059 708 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 GLIPR1P48060 266 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 INSL3P51460 131 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 SNU13P55769 128 aaKnown RBP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 MAGOHP61326 146 aaKnown RBP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 SLC35B1P78383 322 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 GABPB1Q06547 395 aaPredicted RBP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 FOXE3Q13461 319 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 PMS2P11Q13670 270 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 GRK1Q15835 563 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 C17orf58Q2M2W7 97 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 CXorf66Q5JRM2 361 aaPredicted RBP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 ASRGL1Q7L266 308 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 ZNF429Q86V71 674 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 ERI1Q8IV48 349 aaKnown RBP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 SLC15A3Q8IY34 581 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 COMMD1Q8N668 190 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 ZNF491Q8N8L2 437 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 Q8N9W7 124 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 OR8J3Q8NGG0 315 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 OR4C15Q8NGM1 316 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 OR6K6Q8NGW6 343 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 OR2T4Q8NH00 348 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 MYOZ3Q8TDC0 251 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 ST6GALNAC6Q969X2 333 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 TEAD3Q99594 435 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 KRTAP3-1Q9BYR8 98 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 WDR12Q9GZL7 423 aaKnown RBP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 NDEL1Q9GZM8 345 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 HIPK2Q9H2X6 1198 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 ANKRD19PQ9H560 264 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 PLSCR3Q9NRY6 295 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 LINC00312Q9Y6C7 94 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 VPS13DQ5THJ4 4388 aa4.04□□□□□ -1.76
PTPN4-209ENST00000469511 DYNC1H1Q14204 4646 aaKnown RBP4.04□□□□□ -1.76
PTPN4-209ENST00000469511 IGHV4OR15-8A0A075B7B6 117 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 A0A087WW49 117 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 hADV38S2A0JD32 116 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 OR5B21A6NL26 309 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 A8MZ25 164 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 C12orf77C9JDV5 145 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 G3V318 75 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 M0QZK8 103 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 AP4M1O00189 453 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 NME4O00746 187 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 SLC25A17O43808 307 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 NRASP01111 189 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 IGLV3-1P01715 115 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 IGHG4P01861 327 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 FAM106CPP0CH98 169 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 ARSBP15848 533 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 CFL1P23528 166 aaKnown RBP4.03□□□□□ -1.76
PTPN4-209ENST00000469511 MPZP25189 248 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 CD34P28906 385 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 OR3A1P47881 315 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 NPBWR2P48146 333 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 ESRRGP62508 458 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 CBX1P83916 185 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 LIPEQ05469 1076 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 MEF2CQ06413 473 aaPredicted RBP4.03□□□□□ -1.76
PTPN4-209ENST00000469511 AESQ08117 197 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 ZNF616Q08AN1 781 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 PPP1R8Q12972 351 aaKnown RBP4.03□□□□□ -1.76
PTPN4-209ENST00000469511 ACSM6Q6P461 480 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 TRAPPC6BQ86SZ2 158 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 SATL1Q86VE3 508 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 FOXRED2Q8IWF2 684 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 FAM71E2Q8N5Q1 922 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 Q8N6K4 173 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 FAM81AQ8TBF8 368 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 ZNF596Q8TC21 504 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 OR51E1Q8TCB6 317 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 THEM6Q8WUY1 208 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 SLAMF9Q96A28 289 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 TLCD1Q96CP7 247 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 KCTD7Q96MP8 289 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 C8orf49Q96NF6 230 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 CADM1Q9BY67 442 aaKnown RBP4.03□□□□□ -1.76
PTPN4-209ENST00000469511 TTTY10Q9BZA0 68 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 ABCG5Q9H222 651 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 RGCCQ9H4X1 137 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 RABEP2Q9H5N1 569 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 AKIP1Q9NQ31 210 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 GPR84Q9NQS5 396 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 DKK2Q9UBU2 259 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 CD300AQ9UGN4 299 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 PIGLQ9Y2B2 252 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 WSB1Q9Y6I7 421 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 V9GYQ6 96 aa4.03□□□□□ -1.76
PTPN4-209ENST00000469511 DNAH17Q9UFH2 4485 aa4.02□□□□□ -1.77
PTPN4-209ENST00000469511 A0A1B0GTI1 187 aa4.02□□□□□ -1.77
PTPN4-209ENST00000469511 LOC102723971A0A1B0GUV8 181 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms