RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 BAP18Q8IXM2 172 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 COX18Q8N8Q8 333 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 GDPD1Q8N9F7 314 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 BEST4Q8NFU0 473 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 OR10G7Q8NGN6 311 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 SEC22AQ96IW7 307 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 FCRL1Q96LA6 429 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 BIRC8Q96P09 236 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 KLF6Q99612 283 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 MRPL45Q9BRJ2 306 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 ISG20L2Q9H9L3 353 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 NANOGQ9H9S0 305 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 ESM1Q9NQ30 184 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 C19orf25Q9UFG5 118 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 PRNDQ9UKY0 176 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 IGKV3D-15A0A087WSY6 115 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 C20orf202A1L168 122 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 TMEM189A5PLL7 270 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 TRAPPC13A5PLN9 417 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 TCP10L2B9ZVM9 353 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 F6UZH7 168 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 IFNA17P01571 189 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 TTRP02766 147 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 PRSS1P07477 247 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 PGA5P0DJD9 388 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 HLA-DOBP13765 273 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 SLC2A5P22732 501 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 CDK2P24941 298 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 GGT2P36268 569 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 ATP4BP51164 291 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 ABCE1P61221 599 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 SLC35A1P78382 337 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 OR8B8Q15620 311 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 OR7A5Q15622 319 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 CNPY1Q3B7I2 92 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 LCE3CQ5T5A8 94 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 ATP1A1-AS1Q5TC04 95 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 CHMP1BQ7LBR1 199 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 DEFB128Q7Z7B8 93 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 LINC01551Q86U37 167 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 P2RY8Q86VZ1 359 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 CTAGE3PQ8IX95 158 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 PDZD9Q8IXQ8 264 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 UBALD2Q8IYN6 164 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 C4orf33Q8N1A6 199 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 CBR4Q8N4T8 237 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM24BQ8N5W8 94 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 OR52L1Q8NGH7 329 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 OR51A2Q8NGJ7 313 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 OR9I1Q8NGQ6 314 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 OR2A1Q8NGT9 310 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 PTX4Q96A99 478 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 BORCS7Q96B45 105 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF354BQ96LW1 612 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 CCDC115Q96NT0 180 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 RARRES2Q99969 163 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 RTBDNQ9BSG5 229 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 KRTAP4-4Q9BYR3 166 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 SH3BGRL3Q9H299 93 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 ANXA10Q9UJ72 324 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 U3KQ87 197 aa3.85□□□□□ -1.79
CCDC88A-210ENST00000468534 IGKV3D-20A0A0C4DH25 116 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 A0A0U1RQV1 116 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 A0A1B0GX51 115 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 A0A1W2PS18 150 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 CDX4O14627 284 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 YIF1AO95070 293 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 CDS2O95674 445 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 PGA4P0DJD7 388 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 PGA3P0DJD8 388 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 TDGF1P3P51864 188 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 APOC4P55056 127 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 PPP3R1P63098 170 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 SELENOWP63302 87 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 SLC35A2P78381 396 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 PLCXD2Q0VAA5 305 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 NEDD8Q15843 81 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 IAH1Q2TAA2 248 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 CEACAM16Q2WEN9 425 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 ATP6AP1LQ52LC2 224 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 STEAP4Q687X5 459 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 OR2T5Q6IEZ7 315 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 IGFL2Q6UWQ7 119 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM183BPQ6ZVS7 135 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 MRPL55Q7Z7F7 128 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 METTL27Q8N6F8 245 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 OR6F1Q8NGZ6 308 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 OR2T29Q8NH02 315 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 OR4C6Q8NH72 309 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 OR1S1Q8NH92 325 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 NT5CQ8TCD5 201 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 SRSF12Q8WXF0 261 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 AURKBQ96GD4 344 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 REEP6Q96HR9 211 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 GPR82Q96P67 336 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 OR52E6Q96RD3 313 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 LXNQ9BS40 222 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 FAAP24Q9BTP7 215 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 MROQ9BYG7 248 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 SLCO1B3Q9NPD5 702 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms