RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 FBXO6Q9NRD1 293 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 GIN1Q9NXP7 522 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 P2RX2Q9UBL9 471 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 HHLA2Q9UM44 414 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 ETV7Q9Y603 341 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 TMED7-TICAM2A0A0A6YYA0 188 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 HELTA6NFD8 242 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 KRTAP9-6A8MVA2 160 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 ARPC1BO15143 372 aaKnown RBP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 SCN2BO60939 215 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 ENTPD5O75356 428 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 C1QBP02746 253 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 HLA-DPB1P04440 258 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 MMP7P09237 267 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 LGALS1P09382 135 aaKnown RBP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 CCDC172P0C7W6 258 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 CFC1BP0CG36 223 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 VDAC1P21796 283 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 PTBP1P26599 531 aaKnown RBP eCLIP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 EIF3EP60228 445 aaKnown RBP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 CDKL1Q00532 357 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 FASTKD3Q14CZ7 662 aaKnown RBP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 SPHARQ15513 63 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 GUCA2BQ16661 112 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 VPS26BQ4G0F5 336 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 FAM159AQ6UWV7 190 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 Q6ZRN7 208 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF383Q8NA42 475 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 OR13D1Q8NGV5 346 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 OR4A5Q8NH83 315 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF563Q8TA94 476 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 SUN5Q8TC36 379 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 TM4SF18Q96CE8 201 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 NSL1Q96IY1 281 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 C4orf36Q96KX1 117 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 LRR1Q96L50 414 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 CXorf58Q96LI9 332 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 KCTD7Q96MP8 289 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 NEDD4LQ96PU5 975 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 NMNAT2Q9BZQ4 307 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 FAM192AQ9GZU8 254 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 CACNG5Q9UF02 275 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 CHMP2BQ9UQN3 213 aa3.39□□□□□ -1.87
HMGB1-207ENST00000468384 V9GYY5 206 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-207ENST00000468384 A0A075B6Q4 140 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 IGLV5-45A0A087WSX0 123 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 A0A087WTM6 91 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 IGLV9-49A0A0B4J1Y8 123 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 SRRM4A7MD48 611 aaKnown RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 FGF16O43320 207 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 SNNO75324 88 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 FARS2O95363 451 aaKnown RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 MT-ND2P03891 347 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 SEMG1P04279 462 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 ACAA1P09110 424 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 FCGR1AP12314 374 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 NCF2P19878 526 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 TUBG1P23258 451 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 PRDX2P32119 198 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 MPIP34949 423 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 CD200P41217 278 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 CDKN2BP42772 138 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 ATP5IP56385 69 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 RAB40BQ12829 278 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 PDIA2Q13087 525 aaKnown RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 C1DQ13901 141 aaKnown RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 CDK5R1Q15078 307 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 TWIST1Q15672 202 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 MICBQ29980 383 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 ANKRD55Q3KP44 614 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 KRT71Q3SY84 523 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 GPAT3Q53EU6 434 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 SEL1L2Q5TEA6 688 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 Q6ZSA8 131 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 CENPQQ7L2Z9 268 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 OR52J3Q8NH60 311 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 PNPT1Q8TCS8 783 aaKnown RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 ACOT11Q8WXI4 607 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 EXOSC8Q96B26 276 aaKnown RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 BPIFA2Q96DR5 249 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 FAM210BQ96KR6 192 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 SERPINB12Q96P63 405 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 FAIM2Q9BWQ8 316 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 BARHL1Q9BZE3 327 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 HOXD1Q9GZZ0 328 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 ELL3Q9HB65 397 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-207ENST00000468384 TUBG2Q9NRH3 451 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 TMEM38BQ9NVV0 291 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 RDH8Q9NYR8 311 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 KLHDC2Q9Y2U9 406 aa3.38□□□□□ -1.87
HMGB1-207ENST00000468384 SNURFLB1AK76 121 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 BMPR1BO00238 502 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 ATP6V0E1O15342 81 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 MTRF1O75570 445 aaKnown RBP3.37□□□□□ -1.87
HMGB1-207ENST00000468384 MUC1P15941 1255 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-207ENST00000468384 SYT1P21579 422 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 CA6P23280 308 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 CAPGP40121 348 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 SLC1A6P48664 564 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 RAB9AP51151 201 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms