RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SLX4IPQ5VYV7 408 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 C11orf88Q6PI97 169 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 CALHM1Q8IU99 346 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 GID4Q8IVV7 300 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 MKXQ8IYA7 352 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 C11orf42Q8N5U0 333 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 CD177Q8N6Q3 437 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 TMEM163Q8TC26 289 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 SSX3Q99909 188 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 TM2D2Q9BX73 214 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 TTTY10Q9BZA0 68 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 RANBP3Q9H6Z4 567 aaPredicted RBP5.87□□□□□ -1.47
USP54-208ENST00000461520 HEXA-AS1Q9H8Q6 139 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 ADGRL4Q9HBW9 690 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 HES4Q9HCC6 221 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 RAB18Q9NP72 206 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 KRT84Q9NSB2 600 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 C19orf12Q9NSK7 152 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 CLN6Q9NWW5 311 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 USE1Q9NZ43 259 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 OR52A1Q9UKL2 312 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.87□□□□□ -1.47
USP54-208ENST00000461520 SNX5Q9Y5X3 404 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 V9GYS6 101 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 A0A1B0GTI1 187 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 ZNF670-ZNF695F2Z2N8 137 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 G3V2T6 193 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 H3BNX3 289 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 RRHO14718 337 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 NXPH2O95156 264 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 MBPP02686 304 aaPredicted RBP5.86□□□□□ -1.47
USP54-208ENST00000461520 TK1P04183 234 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 PSG1P11464 419 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 CCL1P22362 96 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 GABRA5P31644 462 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 ERVK11-1P61568 191 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 IL24Q13007 206 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 HERPUD1Q15011 391 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 LRRC75BQ2VPJ9 315 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 C12orf73Q69YU5 71 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 KDM4DQ6B0I6 523 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 HIST2H2BDQ6DRA6 164 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 MZT2AQ6P582 158 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 Q6ZTK2 550 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 ASRGL1Q7L266 308 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 SLC35F2Q8IXU6 374 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 TCEANCQ8N8B7 351 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 CCDC54Q8NEL0 328 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 OR4C13Q8NGP0 309 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 OR2T27Q8NH04 317 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 BCAS4Q8TDM0 211 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 C17orf50Q8WW18 174 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 ZNF488Q96MN9 340 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 APOL4Q9BPW4 351 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 NRIP2Q9BQI9 281 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 PKIBQ9C010 78 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 GPR173Q9NS66 373 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 ENOPH1Q9UHY7 261 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 MRM2Q9UI43 246 aaKnown RBP5.86□□□□□ -1.47
USP54-208ENST00000461520 GTF2A1LQ9UNN4 478 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 SLC7A11Q9UPY5 501 aa5.86□□□□□ -1.47
USP54-208ENST00000461520 FAM90A8PA6NJQ4 464 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 C17orf98A8MV24 154 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 K7N7A8 449 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 M0R129 80 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 DYNC1I1O14576 645 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 MAGEB4O15481 346 aaPredicted RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 MITFO75030 526 aaPredicted RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 RBP4P02753 201 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 KRT8P05787 483 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 CSF1P09603 554 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 OR2T7P0C7T2 308 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 CCL3L1P16619 93 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 FASP25445 335 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 EPHA2P29317 976 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 CEBPDP49716 269 aaPredicted RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 EFNB2P52799 333 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 GALEQ14376 348 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 ZNF273Q14593 569 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 ATP6AP1Q15904 470 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 LY6EQ16553 131 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 PLEKHG7Q6ZR37 379 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 ANGPTL5Q86XS5 388 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 YIPF7Q8N8F6 280 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 OR4M1Q8NGD0 313 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 OR2T6Q8NHC8 308 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 FAM110DQ8TAY7 271 aaPredicted RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 WIPF2Q8TF74 440 aaPredicted RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 RORBQ92753 470 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 C10orf35Q96D05 121 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 IL4I1Q96RQ9 567 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 CDCA4Q9BXL8 241 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 CADM1Q9BY67 442 aaKnown RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 NPFFR1Q9GZQ6 430 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 GABARAPL1Q9H0R8 117 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 PLEKHA1Q9HB21 404 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 OR14J1Q9UGF5 321 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 WARS2Q9UGM6 360 aaKnown RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 ZNF580Q9UK33 172 aa5.85□□□□□ -1.47
USP54-208ENST00000461520 SLC22A13Q9Y226 551 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms